miRNA display CGI


Results 41 - 60 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16164 5' -63 NC_004065.1 + 101845 0.69 0.557784
Target:  5'- uGCUCGcggGgGCGUCgGGGGCGCUAu -3'
miRNA:   3'- uCGAGCuggCgCGCAGgCCUCGCGGU- -5'
16164 5' -63 NC_004065.1 + 102049 0.66 0.736137
Target:  5'- cGCggCGGCCGgGCGUU---AGCGCCGa -3'
miRNA:   3'- uCGa-GCUGGCgCGCAGgccUCGCGGU- -5'
16164 5' -63 NC_004065.1 + 102881 0.66 0.680567
Target:  5'- gGGCgaUCG-CCGC-CG-CCGGuAGCGCCGc -3'
miRNA:   3'- -UCG--AGCuGGCGcGCaGGCC-UCGCGGU- -5'
16164 5' -63 NC_004065.1 + 103764 0.68 0.599111
Target:  5'- gGGcCUCcgGACCGuCGCGcagcagcuggugaucUCCGcGAGCGCCGc -3'
miRNA:   3'- -UC-GAG--CUGGC-GCGC---------------AGGC-CUCGCGGU- -5'
16164 5' -63 NC_004065.1 + 104658 0.68 0.567117
Target:  5'- gAGCU-GACCaagguGCGCGcgCCGGAGgGUCAc -3'
miRNA:   3'- -UCGAgCUGG-----CGCGCa-GGCCUCgCGGU- -5'
16164 5' -63 NC_004065.1 + 104897 0.66 0.727027
Target:  5'- cGGCUgggCGACgGCGCGguggugCCGGcGGCGUa- -3'
miRNA:   3'- -UCGA---GCUGgCGCGCa-----GGCC-UCGCGgu -5'
16164 5' -63 NC_004065.1 + 106590 0.66 0.699304
Target:  5'- uGUUCGGCC-CGUcucUCCGGAcgguGCGCCGa -3'
miRNA:   3'- uCGAGCUGGcGCGc--AGGCCU----CGCGGU- -5'
16164 5' -63 NC_004065.1 + 109912 0.67 0.633245
Target:  5'- cGGCUCGuccgccgcggccGCCGuCGCGUCCcgGGAG-GUCAu -3'
miRNA:   3'- -UCGAGC------------UGGC-GCGCAGG--CCUCgCGGU- -5'
16164 5' -63 NC_004065.1 + 111908 0.67 0.642737
Target:  5'- -cCUCGuCCGCGCGgcgaCGaGAGaCGCCAu -3'
miRNA:   3'- ucGAGCuGGCGCGCag--GC-CUC-GCGGU- -5'
16164 5' -63 NC_004065.1 + 113129 0.66 0.736137
Target:  5'- cAGCUCGAUCcCGCG-CCccAGCGUCAg -3'
miRNA:   3'- -UCGAGCUGGcGCGCaGGccUCGCGGU- -5'
16164 5' -63 NC_004065.1 + 114285 0.66 0.708603
Target:  5'- cGGC-CGACUGCGUcuaccucaGUCgGGAuGCGCUg -3'
miRNA:   3'- -UCGaGCUGGCGCG--------CAGgCCU-CGCGGu -5'
16164 5' -63 NC_004065.1 + 114573 0.68 0.576489
Target:  5'- cGGaucgCGAcCCGCGCGg-CGGAGUGCCc -3'
miRNA:   3'- -UCga--GCU-GGCGCGCagGCCUCGCGGu -5'
16164 5' -63 NC_004065.1 + 114952 0.66 0.699304
Target:  5'- gAGC-CGACCGaggcCGCGUCCucgcGcGCGCCGu -3'
miRNA:   3'- -UCGaGCUGGC----GCGCAGGc---CuCGCGGU- -5'
16164 5' -63 NC_004065.1 + 116703 0.68 0.585895
Target:  5'- uAGaucaUCGAUCcCGCGUCCGGcGCGCgAg -3'
miRNA:   3'- -UCg---AGCUGGcGCGCAGGCCuCGCGgU- -5'
16164 5' -63 NC_004065.1 + 117396 0.76 0.225442
Target:  5'- cGCUCGGCCGCGCGcgCUGGgcucgcGGCGCgGa -3'
miRNA:   3'- uCGAGCUGGCGCGCa-GGCC------UCGCGgU- -5'
16164 5' -63 NC_004065.1 + 119248 0.67 0.641788
Target:  5'- cGCUCcgaaacgGGCCGCGCG-CCuuauaugucaGGcGGCGCCAg -3'
miRNA:   3'- uCGAG-------CUGGCGCGCaGG----------CC-UCGCGGU- -5'
16164 5' -63 NC_004065.1 + 120027 0.72 0.355463
Target:  5'- cGCUUG-CCGaagaggcgcaGCGUCCaGAGCGCCAg -3'
miRNA:   3'- uCGAGCuGGCg---------CGCAGGcCUCGCGGU- -5'
16164 5' -63 NC_004065.1 + 121470 0.7 0.458983
Target:  5'- cAGgUCGGuCgGCGCGUCCGcGGGCGUgAa -3'
miRNA:   3'- -UCgAGCU-GgCGCGCAGGC-CUCGCGgU- -5'
16164 5' -63 NC_004065.1 + 122734 0.68 0.614264
Target:  5'- uAGCacUGGCCGUGCGU-CGG-GCGCCc -3'
miRNA:   3'- -UCGa-GCUGGCGCGCAgGCCuCGCGGu -5'
16164 5' -63 NC_004065.1 + 124461 0.66 0.708603
Target:  5'- cGC-CGACgGCGCGccgugCCGcuGCGCCGg -3'
miRNA:   3'- uCGaGCUGgCGCGCa----GGCcuCGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.