miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16164 5' -63 NC_004065.1 + 207536 0.66 0.727027
Target:  5'- -cCUCG-CCGCGCGcUCCGcGucgucGCGCCu -3'
miRNA:   3'- ucGAGCuGGCGCGC-AGGC-Cu----CGCGGu -5'
16164 5' -63 NC_004065.1 + 206797 0.66 0.736137
Target:  5'- cGCUCGugU-CGCGUCCaGAguccguGCGCCu -3'
miRNA:   3'- uCGAGCugGcGCGCAGGcCU------CGCGGu -5'
16164 5' -63 NC_004065.1 + 202729 0.7 0.493942
Target:  5'- uAGgaCGGCCGUuucggcucGUGUCCcGAGCGCCGu -3'
miRNA:   3'- -UCgaGCUGGCG--------CGCAGGcCUCGCGGU- -5'
16164 5' -63 NC_004065.1 + 200887 0.69 0.52094
Target:  5'- gGGCUCGGCUGCcCGUCgCGcuGGGCGaCCGg -3'
miRNA:   3'- -UCGAGCUGGCGcGCAG-GC--CUCGC-GGU- -5'
16164 5' -63 NC_004065.1 + 200226 0.69 0.557784
Target:  5'- uGGC-CGAgCaGCGUGUaacggcccgCCGGAGCGCCc -3'
miRNA:   3'- -UCGaGCUgG-CGCGCA---------GGCCUCGCGGu -5'
16164 5' -63 NC_004065.1 + 199515 0.66 0.679626
Target:  5'- cGCggCGGCCgccacguGCGCGcagCCGG-GCGCCu -3'
miRNA:   3'- uCGa-GCUGG-------CGCGCa--GGCCuCGCGGu -5'
16164 5' -63 NC_004065.1 + 198918 0.68 0.59533
Target:  5'- -uCUCGAUCGCGCGccgCCGG-GCGUUc -3'
miRNA:   3'- ucGAGCUGGCGCGCa--GGCCuCGCGGu -5'
16164 5' -63 NC_004065.1 + 192305 0.69 0.511874
Target:  5'- cAGCUUcACgCGCGUGUCCGGGcacgacGCGUCGa -3'
miRNA:   3'- -UCGAGcUG-GCGCGCAGGCCU------CGCGGU- -5'
16164 5' -63 NC_004065.1 + 187985 0.66 0.717847
Target:  5'- cAGCUgCGGCCGCGCGcaacauggcUCgCGGAG-GuCCGc -3'
miRNA:   3'- -UCGA-GCUGGCGCGC---------AG-GCCUCgC-GGU- -5'
16164 5' -63 NC_004065.1 + 169372 0.71 0.442004
Target:  5'- cAGCUCGACgCGUGCGUggCgCGGGGCaacacgGCCGu -3'
miRNA:   3'- -UCGAGCUG-GCGCGCA--G-GCCUCG------CGGU- -5'
16164 5' -63 NC_004065.1 + 164545 0.67 0.642737
Target:  5'- uAGCUCG-CUGUGuCGagCCGGcggcGGCGCCGa -3'
miRNA:   3'- -UCGAGCuGGCGC-GCa-GGCC----UCGCGGU- -5'
16164 5' -63 NC_004065.1 + 164336 0.67 0.633245
Target:  5'- cAGCUCGcacgcCCGCGCGaugUCCucGGGCGUCGg -3'
miRNA:   3'- -UCGAGCu----GGCGCGC---AGGc-CUCGCGGU- -5'
16164 5' -63 NC_004065.1 + 163875 0.69 0.530069
Target:  5'- cGCUCGGCCagcugGCGCcgGUCCGcGGcccagcGCGCCAg -3'
miRNA:   3'- uCGAGCUGG-----CGCG--CAGGC-CU------CGCGGU- -5'
16164 5' -63 NC_004065.1 + 162995 0.68 0.592497
Target:  5'- cAGUUCGAcaugcacuggcugcCCGCGCGgggcCCGuacacGGGCGCCGa -3'
miRNA:   3'- -UCGAGCU--------------GGCGCGCa---GGC-----CUCGCGGU- -5'
16164 5' -63 NC_004065.1 + 162671 1.01 0.004104
Target:  5'- uAGaCUCGACCGCGCGUCCGGAGCGCCAu -3'
miRNA:   3'- -UC-GAGCUGGCGCGCAGGCCUCGCGGU- -5'
16164 5' -63 NC_004065.1 + 162467 0.67 0.623752
Target:  5'- cGGCgaaGGCCucGCGCGgCCggccaggacgaGGAGCGCCAc -3'
miRNA:   3'- -UCGag-CUGG--CGCGCaGG-----------CCUCGCGGU- -5'
16164 5' -63 NC_004065.1 + 161370 0.67 0.661693
Target:  5'- cGC-CGACUGCGCGUacgccUCGGccgccuGUGCCAg -3'
miRNA:   3'- uCGaGCUGGCGCGCA-----GGCCu-----CGCGGU- -5'
16164 5' -63 NC_004065.1 + 158167 0.67 0.642737
Target:  5'- uGgUCGGCCGCGCuuUCCGGAucccUGCCGc -3'
miRNA:   3'- uCgAGCUGGCGCGc-AGGCCUc---GCGGU- -5'
16164 5' -63 NC_004065.1 + 154887 0.66 0.717847
Target:  5'- uGCUCGccuacuuuuacGCCGUGCGcugcaUGGAGCGCg- -3'
miRNA:   3'- uCGAGC-----------UGGCGCGCag---GCCUCGCGgu -5'
16164 5' -63 NC_004065.1 + 152813 0.67 0.661693
Target:  5'- cAGCgUGGCCaucGC-CGUgCGGGGCGCCGc -3'
miRNA:   3'- -UCGaGCUGG---CGcGCAgGCCUCGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.