miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16164 5' -63 NC_004065.1 + 152352 0.72 0.377091
Target:  5'- cGGCUCGAucuccgaCUGcCGCGUCUuGAGCGCCu -3'
miRNA:   3'- -UCGAGCU-------GGC-GCGCAGGcCUCGCGGu -5'
16164 5' -63 NC_004065.1 + 152050 0.67 0.642737
Target:  5'- cGGCUCG-CCGCggccaGCGUCuCGGGGCucgacGUCAc -3'
miRNA:   3'- -UCGAGCuGGCG-----CGCAG-GCCUCG-----CGGU- -5'
16164 5' -63 NC_004065.1 + 151529 0.66 0.699304
Target:  5'- cGCUgcCGGCCGgGCGgugUCGGGcGCGCUu -3'
miRNA:   3'- uCGA--GCUGGCgCGCa--GGCCU-CGCGGu -5'
16164 5' -63 NC_004065.1 + 151158 0.66 0.717847
Target:  5'- cGUcggCGACCGCGag-CUGGcGCGCCGg -3'
miRNA:   3'- uCGa--GCUGGCGCgcaGGCCuCGCGGU- -5'
16164 5' -63 NC_004065.1 + 150506 0.67 0.632295
Target:  5'- cGCUCGGCCGUGCGUaCCucGGCGaugggaaCCAc -3'
miRNA:   3'- uCGAGCUGGCGCGCA-GGccUCGC-------GGU- -5'
16164 5' -63 NC_004065.1 + 146832 0.66 0.689956
Target:  5'- gGGaCUCGAgaGCGgGccgCCgGGAGCGCCu -3'
miRNA:   3'- -UC-GAGCUggCGCgCa--GG-CCUCGCGGu -5'
16164 5' -63 NC_004065.1 + 142704 0.67 0.6702
Target:  5'- uGCUCcugGACCG-GCGUCgGGgguccugGGCGCCu -3'
miRNA:   3'- uCGAG---CUGGCgCGCAGgCC-------UCGCGGu -5'
16164 5' -63 NC_004065.1 + 141868 0.67 0.671144
Target:  5'- cGCUCGuCCG-GCGagCGG-GCGCCc -3'
miRNA:   3'- uCGAGCuGGCgCGCagGCCuCGCGGu -5'
16164 5' -63 NC_004065.1 + 139898 0.66 0.708603
Target:  5'- ---gUGGCCGCGgGgccuccggCCGGcGGCGCCAg -3'
miRNA:   3'- ucgaGCUGGCGCgCa-------GGCC-UCGCGGU- -5'
16164 5' -63 NC_004065.1 + 138244 0.67 0.671144
Target:  5'- cGCUCG-CCGC-CGUCgaGGAGgGUCGg -3'
miRNA:   3'- uCGAGCuGGCGcGCAGg-CCUCgCGGU- -5'
16164 5' -63 NC_004065.1 + 136622 0.66 0.708603
Target:  5'- cGCUgguccgaGGCgGCG-GUCCGGAGCGgCGu -3'
miRNA:   3'- uCGAg------CUGgCGCgCAGGCCUCGCgGU- -5'
16164 5' -63 NC_004065.1 + 136508 0.68 0.59533
Target:  5'- gAGCUgGuCCgggaagccagGCGgGUCCGGGGUGCUg -3'
miRNA:   3'- -UCGAgCuGG----------CGCgCAGGCCUCGCGGu -5'
16164 5' -63 NC_004065.1 + 130790 0.75 0.241207
Target:  5'- cGGCUCGACUGCGagaCGUCCaucuuccuGGAGCGCg- -3'
miRNA:   3'- -UCGAGCUGGCGC---GCAGG--------CCUCGCGgu -5'
16164 5' -63 NC_004065.1 + 130501 0.69 0.530069
Target:  5'- uGCUCaucgaGCCGCGCGUCCuccucgugcGCGCCAg -3'
miRNA:   3'- uCGAGc----UGGCGCGCAGGccu------CGCGGU- -5'
16164 5' -63 NC_004065.1 + 130476 0.68 0.59533
Target:  5'- cGGC-CGuCCGcCGCGgcgagaCgGGAGCGCCGa -3'
miRNA:   3'- -UCGaGCuGGC-GCGCa-----GgCCUCGCGGU- -5'
16164 5' -63 NC_004065.1 + 128446 0.68 0.614264
Target:  5'- gAGCgCGGCgGagGCGUCCGcGGGCGCg- -3'
miRNA:   3'- -UCGaGCUGgCg-CGCAGGC-CUCGCGgu -5'
16164 5' -63 NC_004065.1 + 127637 0.67 0.642737
Target:  5'- cGCUCGcgcuGCCGCuGCGgcgCCGaGGGCGgCGg -3'
miRNA:   3'- uCGAGC----UGGCG-CGCa--GGC-CUCGCgGU- -5'
16164 5' -63 NC_004065.1 + 127323 0.7 0.458983
Target:  5'- cGC-CGACUGCGCGcgucaagagcgcUCCGGucuGCGUCAa -3'
miRNA:   3'- uCGaGCUGGCGCGC------------AGGCCu--CGCGGU- -5'
16164 5' -63 NC_004065.1 + 126259 0.67 0.661693
Target:  5'- cAGCU--GCUGCGCGacggUCCGGAGgcccCGCCGc -3'
miRNA:   3'- -UCGAgcUGGCGCGC----AGGCCUC----GCGGU- -5'
16164 5' -63 NC_004065.1 + 124461 0.66 0.708603
Target:  5'- cGC-CGACgGCGCGccgugCCGcuGCGCCGg -3'
miRNA:   3'- uCGaGCUGgCGCGCa----GGCcuCGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.