Results 41 - 60 of 99 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16164 | 5' | -63 | NC_004065.1 | + | 122734 | 0.68 | 0.614264 |
Target: 5'- uAGCacUGGCCGUGCGU-CGG-GCGCCc -3' miRNA: 3'- -UCGa-GCUGGCGCGCAgGCCuCGCGGu -5' |
|||||||
16164 | 5' | -63 | NC_004065.1 | + | 121470 | 0.7 | 0.458983 |
Target: 5'- cAGgUCGGuCgGCGCGUCCGcGGGCGUgAa -3' miRNA: 3'- -UCgAGCU-GgCGCGCAGGC-CUCGCGgU- -5' |
|||||||
16164 | 5' | -63 | NC_004065.1 | + | 120027 | 0.72 | 0.355463 |
Target: 5'- cGCUUG-CCGaagaggcgcaGCGUCCaGAGCGCCAg -3' miRNA: 3'- uCGAGCuGGCg---------CGCAGGcCUCGCGGU- -5' |
|||||||
16164 | 5' | -63 | NC_004065.1 | + | 119248 | 0.67 | 0.641788 |
Target: 5'- cGCUCcgaaacgGGCCGCGCG-CCuuauaugucaGGcGGCGCCAg -3' miRNA: 3'- uCGAG-------CUGGCGCGCaGG----------CC-UCGCGGU- -5' |
|||||||
16164 | 5' | -63 | NC_004065.1 | + | 117396 | 0.76 | 0.225442 |
Target: 5'- cGCUCGGCCGCGCGcgCUGGgcucgcGGCGCgGa -3' miRNA: 3'- uCGAGCUGGCGCGCa-GGCC------UCGCGgU- -5' |
|||||||
16164 | 5' | -63 | NC_004065.1 | + | 116703 | 0.68 | 0.585895 |
Target: 5'- uAGaucaUCGAUCcCGCGUCCGGcGCGCgAg -3' miRNA: 3'- -UCg---AGCUGGcGCGCAGGCCuCGCGgU- -5' |
|||||||
16164 | 5' | -63 | NC_004065.1 | + | 114952 | 0.66 | 0.699304 |
Target: 5'- gAGC-CGACCGaggcCGCGUCCucgcGcGCGCCGu -3' miRNA: 3'- -UCGaGCUGGC----GCGCAGGc---CuCGCGGU- -5' |
|||||||
16164 | 5' | -63 | NC_004065.1 | + | 114573 | 0.68 | 0.576489 |
Target: 5'- cGGaucgCGAcCCGCGCGg-CGGAGUGCCc -3' miRNA: 3'- -UCga--GCU-GGCGCGCagGCCUCGCGGu -5' |
|||||||
16164 | 5' | -63 | NC_004065.1 | + | 114285 | 0.66 | 0.708603 |
Target: 5'- cGGC-CGACUGCGUcuaccucaGUCgGGAuGCGCUg -3' miRNA: 3'- -UCGaGCUGGCGCG--------CAGgCCU-CGCGGu -5' |
|||||||
16164 | 5' | -63 | NC_004065.1 | + | 113129 | 0.66 | 0.736137 |
Target: 5'- cAGCUCGAUCcCGCG-CCccAGCGUCAg -3' miRNA: 3'- -UCGAGCUGGcGCGCaGGccUCGCGGU- -5' |
|||||||
16164 | 5' | -63 | NC_004065.1 | + | 111908 | 0.67 | 0.642737 |
Target: 5'- -cCUCGuCCGCGCGgcgaCGaGAGaCGCCAu -3' miRNA: 3'- ucGAGCuGGCGCGCag--GC-CUC-GCGGU- -5' |
|||||||
16164 | 5' | -63 | NC_004065.1 | + | 109912 | 0.67 | 0.633245 |
Target: 5'- cGGCUCGuccgccgcggccGCCGuCGCGUCCcgGGAG-GUCAu -3' miRNA: 3'- -UCGAGC------------UGGC-GCGCAGG--CCUCgCGGU- -5' |
|||||||
16164 | 5' | -63 | NC_004065.1 | + | 106590 | 0.66 | 0.699304 |
Target: 5'- uGUUCGGCC-CGUcucUCCGGAcgguGCGCCGa -3' miRNA: 3'- uCGAGCUGGcGCGc--AGGCCU----CGCGGU- -5' |
|||||||
16164 | 5' | -63 | NC_004065.1 | + | 104897 | 0.66 | 0.727027 |
Target: 5'- cGGCUgggCGACgGCGCGguggugCCGGcGGCGUa- -3' miRNA: 3'- -UCGA---GCUGgCGCGCa-----GGCC-UCGCGgu -5' |
|||||||
16164 | 5' | -63 | NC_004065.1 | + | 104658 | 0.68 | 0.567117 |
Target: 5'- gAGCU-GACCaagguGCGCGcgCCGGAGgGUCAc -3' miRNA: 3'- -UCGAgCUGG-----CGCGCa-GGCCUCgCGGU- -5' |
|||||||
16164 | 5' | -63 | NC_004065.1 | + | 103764 | 0.68 | 0.599111 |
Target: 5'- gGGcCUCcgGACCGuCGCGcagcagcuggugaucUCCGcGAGCGCCGc -3' miRNA: 3'- -UC-GAG--CUGGC-GCGC---------------AGGC-CUCGCGGU- -5' |
|||||||
16164 | 5' | -63 | NC_004065.1 | + | 102881 | 0.66 | 0.680567 |
Target: 5'- gGGCgaUCG-CCGC-CG-CCGGuAGCGCCGc -3' miRNA: 3'- -UCG--AGCuGGCGcGCaGGCC-UCGCGGU- -5' |
|||||||
16164 | 5' | -63 | NC_004065.1 | + | 102049 | 0.66 | 0.736137 |
Target: 5'- cGCggCGGCCGgGCGUU---AGCGCCGa -3' miRNA: 3'- uCGa-GCUGGCgCGCAGgccUCGCGGU- -5' |
|||||||
16164 | 5' | -63 | NC_004065.1 | + | 101845 | 0.69 | 0.557784 |
Target: 5'- uGCUCGcggGgGCGUCgGGGGCGCUAu -3' miRNA: 3'- uCGAGCuggCgCGCAGgCCUCGCGGU- -5' |
|||||||
16164 | 5' | -63 | NC_004065.1 | + | 101425 | 0.7 | 0.476304 |
Target: 5'- gGGggCGGCUgGCGCGUgCGGAuGCGCCu -3' miRNA: 3'- -UCgaGCUGG-CGCGCAgGCCU-CGCGGu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home