Results 21 - 40 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16164 | 5' | -63 | NC_004065.1 | + | 103764 | 0.68 | 0.599111 |
Target: 5'- gGGcCUCcgGACCGuCGCGcagcagcuggugaucUCCGcGAGCGCCGc -3' miRNA: 3'- -UC-GAG--CUGGC-GCGC---------------AGGC-CUCGCGGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 198918 | 0.68 | 0.59533 |
Target: 5'- -uCUCGAUCGCGCGccgCCGG-GCGUUc -3' miRNA: 3'- ucGAGCUGGCGCGCa--GGCCuCGCGGu -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 58613 | 0.7 | 0.458983 |
Target: 5'- gAGaUCGACgCGCGCGg-CGGAGuCGCCGg -3' miRNA: 3'- -UCgAGCUG-GCGCGCagGCCUC-GCGGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 92052 | 0.71 | 0.425386 |
Target: 5'- cGCUCGAggcaucucaCGCGCGcUCGGAGgGCCGc -3' miRNA: 3'- uCGAGCUg--------GCGCGCaGGCCUCgCGGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 43957 | 0.71 | 0.417217 |
Target: 5'- aAGCUgGACCGCGCGaUCCacGGGGUgaGCUg -3' miRNA: 3'- -UCGAgCUGGCGCGC-AGG--CCUCG--CGGu -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 26950 | 0.73 | 0.334025 |
Target: 5'- cGCUccggCGGCCGCgGCGggcUCCGGAGCucGCCAa -3' miRNA: 3'- uCGA----GCUGGCG-CGC---AGGCCUCG--CGGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 76397 | 0.75 | 0.25788 |
Target: 5'- gAGCUCG-CCGC-CGUCCGaGuGGCGCCGc -3' miRNA: 3'- -UCGAGCuGGCGcGCAGGC-C-UCGCGGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 130790 | 0.75 | 0.241207 |
Target: 5'- cGGCUCGACUGCGagaCGUCCaucuuccuGGAGCGCg- -3' miRNA: 3'- -UCGAGCUGGCGC---GCAGG--------CCUCGCGgu -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 117396 | 0.76 | 0.225442 |
Target: 5'- cGCUCGGCCGCGCGcgCUGGgcucgcGGCGCgGa -3' miRNA: 3'- uCGAGCUGGCGCGCa-GGCC------UCGCGgU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 64640 | 0.78 | 0.166944 |
Target: 5'- aGGCcaUCGACCGCGCGUCCGccGUGCUg -3' miRNA: 3'- -UCG--AGCUGGCGCGCAGGCcuCGCGGu -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 121470 | 0.7 | 0.458983 |
Target: 5'- cAGgUCGGuCgGCGCGUCCGcGGGCGUgAa -3' miRNA: 3'- -UCgAGCU-GgCGCGCAGGC-CUCGCGgU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 127323 | 0.7 | 0.458983 |
Target: 5'- cGC-CGACUGCGCGcgucaagagcgcUCCGGucuGCGUCAa -3' miRNA: 3'- uCGaGCUGGCGCGC------------AGGCCu--CGCGGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 114573 | 0.68 | 0.576489 |
Target: 5'- cGGaucgCGAcCCGCGCGg-CGGAGUGCCc -3' miRNA: 3'- -UCga--GCU-GGCGCGCagGCCUCGCGGu -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 31029 | 0.69 | 0.557784 |
Target: 5'- -cCUCGGCCGCG-GcCCugccGAGCGCCAg -3' miRNA: 3'- ucGAGCUGGCGCgCaGGc---CUCGCGGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 101845 | 0.69 | 0.557784 |
Target: 5'- uGCUCGcggGgGCGUCgGGGGCGCUAu -3' miRNA: 3'- uCGAGCuggCgCGCAGgCCUCGCGGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 200226 | 0.69 | 0.557784 |
Target: 5'- uGGC-CGAgCaGCGUGUaacggcccgCCGGAGCGCCc -3' miRNA: 3'- -UCGaGCUgG-CGCGCA---------GGCCUCGCGGu -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 130501 | 0.69 | 0.530069 |
Target: 5'- uGCUCaucgaGCCGCGCGUCCuccucgugcGCGCCAg -3' miRNA: 3'- uCGAGc----UGGCGCGCAGGccu------CGCGGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 68578 | 0.69 | 0.52094 |
Target: 5'- gAGCaacgCGGCgGCgGCGaUCCaGAGCGCCGa -3' miRNA: 3'- -UCGa---GCUGgCG-CGC-AGGcCUCGCGGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 202729 | 0.7 | 0.493942 |
Target: 5'- uAGgaCGGCCGUuucggcucGUGUCCcGAGCGCCGu -3' miRNA: 3'- -UCgaGCUGGCG--------CGCAGGcCUCGCGGU- -5' |
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16164 | 5' | -63 | NC_004065.1 | + | 27774 | 0.7 | 0.467602 |
Target: 5'- cGCUgCG-CCGC-CGUCUGGAGgGCCu -3' miRNA: 3'- uCGA-GCuGGCGcGCAGGCCUCgCGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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