miRNA display CGI


Results 41 - 60 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16164 5' -63 NC_004065.1 + 68578 0.69 0.52094
Target:  5'- gAGCaacgCGGCgGCgGCGaUCCaGAGCGCCGa -3'
miRNA:   3'- -UCGa---GCUGgCG-CGC-AGGcCUCGCGGU- -5'
16164 5' -63 NC_004065.1 + 162467 0.67 0.623752
Target:  5'- cGGCgaaGGCCucGCGCGgCCggccaggacgaGGAGCGCCAc -3'
miRNA:   3'- -UCGag-CUGG--CGCGCaGG-----------CCUCGCGGU- -5'
16164 5' -63 NC_004065.1 + 128446 0.68 0.614264
Target:  5'- gAGCgCGGCgGagGCGUCCGcGGGCGCg- -3'
miRNA:   3'- -UCGaGCUGgCg-CGCAGGC-CUCGCGgu -5'
16164 5' -63 NC_004065.1 + 122734 0.68 0.614264
Target:  5'- uAGCacUGGCCGUGCGU-CGG-GCGCCc -3'
miRNA:   3'- -UCGa-GCUGGCGCGCAgGCCuCGCGGu -5'
16164 5' -63 NC_004065.1 + 30866 0.68 0.604789
Target:  5'- cAGCcugUCGACgGCGgGUUC-GAGCGCCc -3'
miRNA:   3'- -UCG---AGCUGgCGCgCAGGcCUCGCGGu -5'
16164 5' -63 NC_004065.1 + 103764 0.68 0.599111
Target:  5'- gGGcCUCcgGACCGuCGCGcagcagcuggugaucUCCGcGAGCGCCGc -3'
miRNA:   3'- -UC-GAG--CUGGC-GCGC---------------AGGC-CUCGCGGU- -5'
16164 5' -63 NC_004065.1 + 198918 0.68 0.59533
Target:  5'- -uCUCGAUCGCGCGccgCCGG-GCGUUc -3'
miRNA:   3'- ucGAGCUGGCGCGCa--GGCCuCGCGGu -5'
16164 5' -63 NC_004065.1 + 114573 0.68 0.576489
Target:  5'- cGGaucgCGAcCCGCGCGg-CGGAGUGCCc -3'
miRNA:   3'- -UCga--GCU-GGCGCGCagGCCUCGCGGu -5'
16164 5' -63 NC_004065.1 + 31029 0.69 0.557784
Target:  5'- -cCUCGGCCGCG-GcCCugccGAGCGCCAg -3'
miRNA:   3'- ucGAGCUGGCGCgCaGGc---CUCGCGGU- -5'
16164 5' -63 NC_004065.1 + 101845 0.69 0.557784
Target:  5'- uGCUCGcggGgGCGUCgGGGGCGCUAu -3'
miRNA:   3'- uCGAGCuggCgCGCAGgCCUCGCGGU- -5'
16164 5' -63 NC_004065.1 + 200226 0.69 0.557784
Target:  5'- uGGC-CGAgCaGCGUGUaacggcccgCCGGAGCGCCc -3'
miRNA:   3'- -UCGaGCUgG-CGCGCA---------GGCCUCGCGGu -5'
16164 5' -63 NC_004065.1 + 130501 0.69 0.530069
Target:  5'- uGCUCaucgaGCCGCGCGUCCuccucgugcGCGCCAg -3'
miRNA:   3'- uCGAGc----UGGCGCGCAGGccu------CGCGGU- -5'
16164 5' -63 NC_004065.1 + 192305 0.69 0.511874
Target:  5'- cAGCUUcACgCGCGUGUCCGGGcacgacGCGUCGa -3'
miRNA:   3'- -UCGAGcUG-GCGCGCAGGCCU------CGCGGU- -5'
16164 5' -63 NC_004065.1 + 82768 0.7 0.485085
Target:  5'- cGGcCUCGGagaGCagGCGUCCGGuGGCGCCGa -3'
miRNA:   3'- -UC-GAGCUgg-CG--CGCAGGCC-UCGCGGU- -5'
16164 5' -63 NC_004065.1 + 101425 0.7 0.476304
Target:  5'- gGGggCGGCUgGCGCGUgCGGAuGCGCCu -3'
miRNA:   3'- -UCgaGCUGG-CGCGCAgGCCU-CGCGGu -5'
16164 5' -63 NC_004065.1 + 169372 0.71 0.442004
Target:  5'- cAGCUCGACgCGUGCGUggCgCGGGGCaacacgGCCGu -3'
miRNA:   3'- -UCGAGCUG-GCGCGCA--G-GCCUCG------CGGU- -5'
16164 5' -63 NC_004065.1 + 97922 0.71 0.401172
Target:  5'- -cCUCGaaccGCCGCGCGUCCGGcaccGGCGUg- -3'
miRNA:   3'- ucGAGC----UGGCGCGCAGGCC----UCGCGgu -5'
16164 5' -63 NC_004065.1 + 152352 0.72 0.377091
Target:  5'- cGGCUCGAucuccgaCUGcCGCGUCUuGAGCGCCu -3'
miRNA:   3'- -UCGAGCU-------GGC-GCGCAGGcCUCGCGGu -5'
16164 5' -63 NC_004065.1 + 120027 0.72 0.355463
Target:  5'- cGCUUG-CCGaagaggcgcaGCGUCCaGAGCGCCAg -3'
miRNA:   3'- uCGAGCuGGCg---------CGCAGGcCUCGCGGU- -5'
16164 5' -63 NC_004065.1 + 102049 0.66 0.736137
Target:  5'- cGCggCGGCCGgGCGUU---AGCGCCGa -3'
miRNA:   3'- uCGa-GCUGGCgCGCAGgccUCGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.