miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16164 5' -63 NC_004065.1 + 91492 0.75 0.25788
Target:  5'- cGCUCGugC-CGCGUUC-GAGCGCCAa -3'
miRNA:   3'- uCGAGCugGcGCGCAGGcCUCGCGGU- -5'
16164 5' -63 NC_004065.1 + 162995 0.68 0.592497
Target:  5'- cAGUUCGAcaugcacuggcugcCCGCGCGgggcCCGuacacGGGCGCCGa -3'
miRNA:   3'- -UCGAGCU--------------GGCGCGCa---GGC-----CUCGCGGU- -5'
16164 5' -63 NC_004065.1 + 130476 0.68 0.59533
Target:  5'- cGGC-CGuCCGcCGCGgcgagaCgGGAGCGCCGa -3'
miRNA:   3'- -UCGaGCuGGC-GCGCa-----GgCCUCGCGGU- -5'
16164 5' -63 NC_004065.1 + 102049 0.66 0.736137
Target:  5'- cGCggCGGCCGgGCGUU---AGCGCCGa -3'
miRNA:   3'- uCGa-GCUGGCgCGCAGgccUCGCGGU- -5'
16164 5' -63 NC_004065.1 + 169372 0.71 0.442004
Target:  5'- cAGCUCGACgCGUGCGUggCgCGGGGCaacacgGCCGu -3'
miRNA:   3'- -UCGAGCUG-GCGCGCA--G-GCCUCG------CGGU- -5'
16164 5' -63 NC_004065.1 + 101425 0.7 0.476304
Target:  5'- gGGggCGGCUgGCGCGUgCGGAuGCGCCu -3'
miRNA:   3'- -UCgaGCUGG-CGCGCAgGCCU-CGCGGu -5'
16164 5' -63 NC_004065.1 + 192305 0.69 0.511874
Target:  5'- cAGCUUcACgCGCGUGUCCGGGcacgacGCGUCGa -3'
miRNA:   3'- -UCGAGcUG-GCGCGCAGGCCU------CGCGGU- -5'
16164 5' -63 NC_004065.1 + 200887 0.69 0.52094
Target:  5'- gGGCUCGGCUGCcCGUCgCGcuGGGCGaCCGg -3'
miRNA:   3'- -UCGAGCUGGCGcGCAG-GC--CUCGC-GGU- -5'
16164 5' -63 NC_004065.1 + 37414 0.69 0.539255
Target:  5'- cGGUgucCGACgGCGCGUucacgCUGGAGCGCg- -3'
miRNA:   3'- -UCGa--GCUGgCGCGCA-----GGCCUCGCGgu -5'
16164 5' -63 NC_004065.1 + 116703 0.68 0.585895
Target:  5'- uAGaucaUCGAUCcCGCGUCCGGcGCGCgAg -3'
miRNA:   3'- -UCg---AGCUGGcGCGCAGGCCuCGCGgU- -5'
16164 5' -63 NC_004065.1 + 104658 0.68 0.567117
Target:  5'- gAGCU-GACCaagguGCGCGcgCCGGAGgGUCAc -3'
miRNA:   3'- -UCGAgCUGG-----CGCGCa-GGCCUCgCGGU- -5'
16164 5' -63 NC_004065.1 + 163875 0.69 0.530069
Target:  5'- cGCUCGGCCagcugGCGCcgGUCCGcGGcccagcGCGCCAg -3'
miRNA:   3'- uCGAGCUGG-----CGCG--CAGGC-CU------CGCGGU- -5'
16164 5' -63 NC_004065.1 + 120027 0.72 0.355463
Target:  5'- cGCUUG-CCGaagaggcgcaGCGUCCaGAGCGCCAg -3'
miRNA:   3'- uCGAGCuGGCg---------CGCAGGcCUCGCGGU- -5'
16164 5' -63 NC_004065.1 + 30156 0.68 0.585895
Target:  5'- cGCUCGuGCUGUGCGgcaCCGacGAGUGCCu -3'
miRNA:   3'- uCGAGC-UGGCGCGCa--GGC--CUCGCGGu -5'
16164 5' -63 NC_004065.1 + 152352 0.72 0.377091
Target:  5'- cGGCUCGAucuccgaCUGcCGCGUCUuGAGCGCCu -3'
miRNA:   3'- -UCGAGCU-------GGC-GCGCAGGcCUCGCGGu -5'
16164 5' -63 NC_004065.1 + 4373 0.69 0.52094
Target:  5'- gAGCgCGACgGCgGCGgcgggagCCGGAGUGCUg -3'
miRNA:   3'- -UCGaGCUGgCG-CGCa------GGCCUCGCGGu -5'
16164 5' -63 NC_004065.1 + 61810 0.68 0.585895
Target:  5'- cAGCUCgGACgGCGCuucaucggaUUCGGAGgCGCCAu -3'
miRNA:   3'- -UCGAG-CUGgCGCGc--------AGGCCUC-GCGGU- -5'
16164 5' -63 NC_004065.1 + 136508 0.68 0.59533
Target:  5'- gAGCUgGuCCgggaagccagGCGgGUCCGGGGUGCUg -3'
miRNA:   3'- -UCGAgCuGG----------CGCgCAGGCCUCGCGGu -5'
16164 5' -63 NC_004065.1 + 97922 0.71 0.401172
Target:  5'- -cCUCGaaccGCCGCGCGUCCGGcaccGGCGUg- -3'
miRNA:   3'- ucGAGC----UGGCGCGCAGGCC----UCGCGgu -5'
16164 5' -63 NC_004065.1 + 82768 0.7 0.485085
Target:  5'- cGGcCUCGGagaGCagGCGUCCGGuGGCGCCGa -3'
miRNA:   3'- -UC-GAGCUgg-CG--CGCAGGCC-UCGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.