miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16164 5' -63 NC_004065.1 + 79333 0.67 0.633245
Target:  5'- cGGUUCGugCGCGCGgaggaCGaGGGCGgCGc -3'
miRNA:   3'- -UCGAGCugGCGCGCag---GC-CUCGCgGU- -5'
16164 5' -63 NC_004065.1 + 130476 0.68 0.59533
Target:  5'- cGGC-CGuCCGcCGCGgcgagaCgGGAGCGCCGa -3'
miRNA:   3'- -UCGaGCuGGC-GCGCa-----GgCCUCGCGGU- -5'
16164 5' -63 NC_004065.1 + 163875 0.69 0.530069
Target:  5'- cGCUCGGCCagcugGCGCcgGUCCGcGGcccagcGCGCCAg -3'
miRNA:   3'- uCGAGCUGG-----CGCG--CAGGC-CU------CGCGGU- -5'
16164 5' -63 NC_004065.1 + 97922 0.71 0.401172
Target:  5'- -cCUCGaaccGCCGCGCGUCCGGcaccGGCGUg- -3'
miRNA:   3'- ucGAGC----UGGCGCGCAGGCC----UCGCGgu -5'
16164 5' -63 NC_004065.1 + 146832 0.66 0.689956
Target:  5'- gGGaCUCGAgaGCGgGccgCCgGGAGCGCCu -3'
miRNA:   3'- -UC-GAGCUggCGCgCa--GG-CCUCGCGGu -5'
16164 5' -63 NC_004065.1 + 152050 0.67 0.642737
Target:  5'- cGGCUCG-CCGCggccaGCGUCuCGGGGCucgacGUCAc -3'
miRNA:   3'- -UCGAGCuGGCG-----CGCAG-GCCUCG-----CGGU- -5'
16164 5' -63 NC_004065.1 + 162995 0.68 0.592497
Target:  5'- cAGUUCGAcaugcacuggcugcCCGCGCGgggcCCGuacacGGGCGCCGa -3'
miRNA:   3'- -UCGAGCU--------------GGCGCGCa---GGC-----CUCGCGGU- -5'
16164 5' -63 NC_004065.1 + 152352 0.72 0.377091
Target:  5'- cGGCUCGAucuccgaCUGcCGCGUCUuGAGCGCCu -3'
miRNA:   3'- -UCGAGCU-------GGC-GCGCAGGcCUCGCGGu -5'
16164 5' -63 NC_004065.1 + 111908 0.67 0.642737
Target:  5'- -cCUCGuCCGCGCGgcgaCGaGAGaCGCCAu -3'
miRNA:   3'- ucGAGCuGGCGCGCag--GC-CUC-GCGGU- -5'
16164 5' -63 NC_004065.1 + 120027 0.72 0.355463
Target:  5'- cGCUUG-CCGaagaggcgcaGCGUCCaGAGCGCCAg -3'
miRNA:   3'- uCGAGCuGGCg---------CGCAGGcCUCGCGGU- -5'
16164 5' -63 NC_004065.1 + 136508 0.68 0.59533
Target:  5'- gAGCUgGuCCgggaagccagGCGgGUCCGGGGUGCUg -3'
miRNA:   3'- -UCGAgCuGG----------CGCgCAGGCCUCGCGGu -5'
16164 5' -63 NC_004065.1 + 164336 0.67 0.633245
Target:  5'- cAGCUCGcacgcCCGCGCGaugUCCucGGGCGUCGg -3'
miRNA:   3'- -UCGAGCu----GGCGCGC---AGGc-CUCGCGGU- -5'
16164 5' -63 NC_004065.1 + 30156 0.68 0.585895
Target:  5'- cGCUCGuGCUGUGCGgcaCCGacGAGUGCCu -3'
miRNA:   3'- uCGAGC-UGGCGCGCa--GGC--CUCGCGGu -5'
16164 5' -63 NC_004065.1 + 37414 0.69 0.539255
Target:  5'- cGGUgucCGACgGCGCGUucacgCUGGAGCGCg- -3'
miRNA:   3'- -UCGa--GCUGgCGCGCA-----GGCCUCGCGgu -5'
16164 5' -63 NC_004065.1 + 192305 0.69 0.511874
Target:  5'- cAGCUUcACgCGCGUGUCCGGGcacgacGCGUCGa -3'
miRNA:   3'- -UCGAGcUG-GCGCGCAGGCCU------CGCGGU- -5'
16164 5' -63 NC_004065.1 + 169372 0.71 0.442004
Target:  5'- cAGCUCGACgCGUGCGUggCgCGGGGCaacacgGCCGu -3'
miRNA:   3'- -UCGAGCUG-GCGCGCA--G-GCCUCG------CGGU- -5'
16164 5' -63 NC_004065.1 + 136622 0.66 0.708603
Target:  5'- cGCUgguccgaGGCgGCG-GUCCGGAGCGgCGu -3'
miRNA:   3'- uCGAg------CUGgCGCgCAGGCCUCGCgGU- -5'
16164 5' -63 NC_004065.1 + 151529 0.66 0.699304
Target:  5'- cGCUgcCGGCCGgGCGgugUCGGGcGCGCUu -3'
miRNA:   3'- uCGA--GCUGGCgCGCa--GGCCU-CGCGGu -5'
16164 5' -63 NC_004065.1 + 141868 0.67 0.671144
Target:  5'- cGCUCGuCCG-GCGagCGG-GCGCCc -3'
miRNA:   3'- uCGAGCuGGCgCGCagGCCuCGCGGu -5'
16164 5' -63 NC_004065.1 + 126259 0.67 0.661693
Target:  5'- cAGCU--GCUGCGCGacggUCCGGAGgcccCGCCGc -3'
miRNA:   3'- -UCGAgcUGGCGCGC----AGGCCUC----GCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.