miRNA display CGI


Results 41 - 60 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16164 5' -63 NC_004065.1 + 151529 0.66 0.699304
Target:  5'- cGCUgcCGGCCGgGCGgugUCGGGcGCGCUu -3'
miRNA:   3'- uCGA--GCUGGCgCGCa--GGCCU-CGCGGu -5'
16164 5' -63 NC_004065.1 + 136622 0.66 0.708603
Target:  5'- cGCUgguccgaGGCgGCG-GUCCGGAGCGgCGu -3'
miRNA:   3'- uCGAg------CUGgCGCgCAGGCCUCGCgGU- -5'
16164 5' -63 NC_004065.1 + 80296 0.66 0.727027
Target:  5'- cGCUgGACCGCuaugaGUCCG-AGgGCCGg -3'
miRNA:   3'- uCGAgCUGGCGcg---CAGGCcUCgCGGU- -5'
16164 5' -63 NC_004065.1 + 85667 0.66 0.717847
Target:  5'- cGGgaCGAuaCUGgGCGUCUGcGGCGCCAu -3'
miRNA:   3'- -UCgaGCU--GGCgCGCAGGCcUCGCGGU- -5'
16164 5' -63 NC_004065.1 + 163875 0.69 0.530069
Target:  5'- cGCUCGGCCagcugGCGCcgGUCCGcGGcccagcGCGCCAg -3'
miRNA:   3'- uCGAGCUGG-----CGCG--CAGGC-CU------CGCGGU- -5'
16164 5' -63 NC_004065.1 + 36146 0.66 0.708603
Target:  5'- cGGCUcCGAUCGCuaGUCCaGcGGCGCUg -3'
miRNA:   3'- -UCGA-GCUGGCGcgCAGGcC-UCGCGGu -5'
16164 5' -63 NC_004065.1 + 37414 0.69 0.539255
Target:  5'- cGGUgucCGACgGCGCGUucacgCUGGAGCGCg- -3'
miRNA:   3'- -UCGa--GCUGgCGCGCA-----GGCCUCGCGgu -5'
16164 5' -63 NC_004065.1 + 113129 0.66 0.736137
Target:  5'- cAGCUCGAUCcCGCG-CCccAGCGUCAg -3'
miRNA:   3'- -UCGAGCUGGcGCGCaGGccUCGCGGU- -5'
16164 5' -63 NC_004065.1 + 43957 0.71 0.417217
Target:  5'- aAGCUgGACCGCGCGaUCCacGGGGUgaGCUg -3'
miRNA:   3'- -UCGAgCUGGCGCGC-AGG--CCUCG--CGGu -5'
16164 5' -63 NC_004065.1 + 206797 0.66 0.736137
Target:  5'- cGCUCGugU-CGCGUCCaGAguccguGCGCCu -3'
miRNA:   3'- uCGAGCugGcGCGCAGGcCU------CGCGGu -5'
16164 5' -63 NC_004065.1 + 41051 0.66 0.736137
Target:  5'- gAGCUCGGgCCGCGCGgcgacgaagCCGaaGAGCuuGUCGu -3'
miRNA:   3'- -UCGAGCU-GGCGCGCa--------GGC--CUCG--CGGU- -5'
16164 5' -63 NC_004065.1 + 88956 0.67 0.642737
Target:  5'- gAGCaCGGgcUCGCGCGUgaugguggccacCUGGGGCGCCu -3'
miRNA:   3'- -UCGaGCU--GGCGCGCA------------GGCCUCGCGGu -5'
16164 5' -63 NC_004065.1 + 127637 0.67 0.642737
Target:  5'- cGCUCGcgcuGCCGCuGCGgcgCCGaGGGCGgCGg -3'
miRNA:   3'- uCGAGC----UGGCG-CGCa--GGC-CUCGCgGU- -5'
16164 5' -63 NC_004065.1 + 109912 0.67 0.633245
Target:  5'- cGGCUCGuccgccgcggccGCCGuCGCGUCCcgGGAG-GUCAu -3'
miRNA:   3'- -UCGAGC------------UGGC-GCGCAGG--CCUCgCGGU- -5'
16164 5' -63 NC_004065.1 + 150506 0.67 0.632295
Target:  5'- cGCUCGGCCGUGCGUaCCucGGCGaugggaaCCAc -3'
miRNA:   3'- uCGAGCUGGCGCGCA-GGccUCGC-------GGU- -5'
16164 5' -63 NC_004065.1 + 162467 0.67 0.623752
Target:  5'- cGGCgaaGGCCucGCGCGgCCggccaggacgaGGAGCGCCAc -3'
miRNA:   3'- -UCGag-CUGG--CGCGCaGG-----------CCUCGCGGU- -5'
16164 5' -63 NC_004065.1 + 26910 0.67 0.661693
Target:  5'- cGCUCGACCGCaCG-CCGGAcC-CCGa -3'
miRNA:   3'- uCGAGCUGGCGcGCaGGCCUcGcGGU- -5'
16164 5' -63 NC_004065.1 + 130501 0.69 0.530069
Target:  5'- uGCUCaucgaGCCGCGCGUCCuccucgugcGCGCCAg -3'
miRNA:   3'- uCGAGc----UGGCGCGCAGGccu------CGCGGU- -5'
16164 5' -63 NC_004065.1 + 68578 0.69 0.52094
Target:  5'- gAGCaacgCGGCgGCgGCGaUCCaGAGCGCCGa -3'
miRNA:   3'- -UCGa---GCUGgCG-CGC-AGGcCUCGCGGU- -5'
16164 5' -63 NC_004065.1 + 202729 0.7 0.493942
Target:  5'- uAGgaCGGCCGUuucggcucGUGUCCcGAGCGCCGu -3'
miRNA:   3'- -UCgaGCUGGCG--------CGCAGGcCUCGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.