miRNA display CGI


Results 61 - 80 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16164 5' -63 NC_004065.1 + 27774 0.7 0.467602
Target:  5'- cGCUgCG-CCGC-CGUCUGGAGgGCCu -3'
miRNA:   3'- uCGA-GCuGGCGcGCAGGCCUCgCGGu -5'
16164 5' -63 NC_004065.1 + 121470 0.7 0.458983
Target:  5'- cAGgUCGGuCgGCGCGUCCGcGGGCGUgAa -3'
miRNA:   3'- -UCgAGCU-GgCGCGCAGGC-CUCGCGgU- -5'
16164 5' -63 NC_004065.1 + 43957 0.71 0.417217
Target:  5'- aAGCUgGACCGCGCGaUCCacGGGGUgaGCUg -3'
miRNA:   3'- -UCGAgCUGGCGCGC-AGG--CCUCG--CGGu -5'
16164 5' -63 NC_004065.1 + 26950 0.73 0.334025
Target:  5'- cGCUccggCGGCCGCgGCGggcUCCGGAGCucGCCAa -3'
miRNA:   3'- uCGA----GCUGGCG-CGC---AGGCCUCG--CGGU- -5'
16164 5' -63 NC_004065.1 + 150506 0.67 0.632295
Target:  5'- cGCUCGGCCGUGCGUaCCucGGCGaugggaaCCAc -3'
miRNA:   3'- uCGAGCUGGCGCGCA-GGccUCGC-------GGU- -5'
16164 5' -63 NC_004065.1 + 109912 0.67 0.633245
Target:  5'- cGGCUCGuccgccgcggccGCCGuCGCGUCCcgGGAG-GUCAu -3'
miRNA:   3'- -UCGAGC------------UGGC-GCGCAGG--CCUCgCGGU- -5'
16164 5' -63 NC_004065.1 + 164545 0.67 0.642737
Target:  5'- uAGCUCG-CUGUGuCGagCCGGcggcGGCGCCGa -3'
miRNA:   3'- -UCGAGCuGGCGC-GCa-GGCC----UCGCGGU- -5'
16164 5' -63 NC_004065.1 + 207536 0.66 0.727027
Target:  5'- -cCUCG-CCGCGCGcUCCGcGucgucGCGCCu -3'
miRNA:   3'- ucGAGCuGGCGCGC-AGGC-Cu----CGCGGu -5'
16164 5' -63 NC_004065.1 + 34580 0.66 0.727027
Target:  5'- cGCa-GACCGUGCGcUCCGcGA-CGCCGu -3'
miRNA:   3'- uCGagCUGGCGCGC-AGGC-CUcGCGGU- -5'
16164 5' -63 NC_004065.1 + 187985 0.66 0.717847
Target:  5'- cAGCUgCGGCCGCGCGcaacauggcUCgCGGAG-GuCCGc -3'
miRNA:   3'- -UCGA-GCUGGCGCGC---------AG-GCCUCgC-GGU- -5'
16164 5' -63 NC_004065.1 + 96277 0.66 0.717847
Target:  5'- cGGCggggCGGCCagGgGCGUCaCGGA-CGCCGu -3'
miRNA:   3'- -UCGa---GCUGG--CgCGCAG-GCCUcGCGGU- -5'
16164 5' -63 NC_004065.1 + 18224 0.66 0.717847
Target:  5'- cGGCUCuuccucCCGCGCcucUCCGGAGuCGUCu -3'
miRNA:   3'- -UCGAGcu----GGCGCGc--AGGCCUC-GCGGu -5'
16164 5' -63 NC_004065.1 + 151158 0.66 0.717847
Target:  5'- cGUcggCGACCGCGag-CUGGcGCGCCGg -3'
miRNA:   3'- uCGa--GCUGGCGCgcaGGCCuCGCGGU- -5'
16164 5' -63 NC_004065.1 + 97416 0.66 0.716925
Target:  5'- cAGCUCGgagaucauGCCGCaGCGguaggaaUCCGuGGCGCCc -3'
miRNA:   3'- -UCGAGC--------UGGCG-CGC-------AGGCcUCGCGGu -5'
16164 5' -63 NC_004065.1 + 124461 0.66 0.708603
Target:  5'- cGC-CGACgGCGCGccgugCCGcuGCGCCGg -3'
miRNA:   3'- uCGaGCUGgCGCGCa----GGCcuCGCGGU- -5'
16164 5' -63 NC_004065.1 + 114285 0.66 0.708603
Target:  5'- cGGC-CGACUGCGUcuaccucaGUCgGGAuGCGCUg -3'
miRNA:   3'- -UCGaGCUGGCGCG--------CAGgCCU-CGCGGu -5'
16164 5' -63 NC_004065.1 + 106590 0.66 0.699304
Target:  5'- uGUUCGGCC-CGUcucUCCGGAcgguGCGCCGa -3'
miRNA:   3'- uCGAGCUGGcGCGc--AGGCCU----CGCGGU- -5'
16164 5' -63 NC_004065.1 + 26910 0.67 0.661693
Target:  5'- cGCUCGACCGCaCG-CCGGAcC-CCGa -3'
miRNA:   3'- uCGAGCUGGCGcGCaGGCCUcGcGGU- -5'
16164 5' -63 NC_004065.1 + 127637 0.67 0.642737
Target:  5'- cGCUCGcgcuGCCGCuGCGgcgCCGaGGGCGgCGg -3'
miRNA:   3'- uCGAGC----UGGCG-CGCa--GGC-CUCGCgGU- -5'
16164 5' -63 NC_004065.1 + 88956 0.67 0.642737
Target:  5'- gAGCaCGGgcUCGCGCGUgaugguggccacCUGGGGCGCCu -3'
miRNA:   3'- -UCGaGCU--GGCGCGCA------------GGCCUCGCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.