miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16165 5' -55.4 NC_004065.1 + 120625 0.66 0.977406
Target:  5'- gCUCgUGG-CGUcCGCCgCGGcCGACGGGc -3'
miRNA:   3'- -GAG-ACCuGUA-GUGGaGCCuGCUGCCU- -5'
16165 5' -55.4 NC_004065.1 + 114899 0.66 0.977406
Target:  5'- ---aGGcCAUCAUCUCGGugGcucCGGGg -3'
miRNA:   3'- gagaCCuGUAGUGGAGCCugCu--GCCU- -5'
16165 5' -55.4 NC_004065.1 + 189363 0.66 0.975015
Target:  5'- gUCUGGaucGCAUCAaCUCGcuGCGACGGc -3'
miRNA:   3'- gAGACC---UGUAGUgGAGCc-UGCUGCCu -5'
16165 5' -55.4 NC_004065.1 + 229600 0.66 0.972445
Target:  5'- gCUCcagGGGguUCACCcccCGGGCG-CGGAa -3'
miRNA:   3'- -GAGa--CCUguAGUGGa--GCCUGCuGCCU- -5'
16165 5' -55.4 NC_004065.1 + 131175 0.66 0.972445
Target:  5'- gUCUGGAUAUgACCgacccccugacaUCGG-CGGCGcGAg -3'
miRNA:   3'- gAGACCUGUAgUGG------------AGCCuGCUGC-CU- -5'
16165 5' -55.4 NC_004065.1 + 68152 0.66 0.972445
Target:  5'- -gCUGGACGcggugaUCGCggCGGcgcgcGCGACGGAg -3'
miRNA:   3'- gaGACCUGU------AGUGgaGCC-----UGCUGCCU- -5'
16165 5' -55.4 NC_004065.1 + 32649 0.66 0.972445
Target:  5'- -cCUGucaACAUCGCCaCGGcccGCGGCGGAg -3'
miRNA:   3'- gaGACc--UGUAGUGGaGCC---UGCUGCCU- -5'
16165 5' -55.4 NC_004065.1 + 75192 0.66 0.96969
Target:  5'- uUCUGcGAgAUC-UCgCGGACGAUGGAc -3'
miRNA:   3'- gAGAC-CUgUAGuGGaGCCUGCUGCCU- -5'
16165 5' -55.4 NC_004065.1 + 131006 0.66 0.96969
Target:  5'- -cCUGGACAUC-Cg-CGGagaccaGCGGCGGAa -3'
miRNA:   3'- gaGACCUGUAGuGgaGCC------UGCUGCCU- -5'
16165 5' -55.4 NC_004065.1 + 162255 0.66 0.969404
Target:  5'- gUCUGGGCGcccgCGCCguucgucacgccgUCGGACG-CGGc -3'
miRNA:   3'- gAGACCUGUa---GUGG-------------AGCCUGCuGCCu -5'
16165 5' -55.4 NC_004065.1 + 165831 0.66 0.966743
Target:  5'- cCUUgaaGAcCGUCACUagGGACGGCGGGg -3'
miRNA:   3'- -GAGac-CU-GUAGUGGagCCUGCUGCCU- -5'
16165 5' -55.4 NC_004065.1 + 117921 0.66 0.966743
Target:  5'- ---gGGAUAUCGCCUCGGGaucCGGu -3'
miRNA:   3'- gagaCCUGUAGUGGAGCCUgcuGCCu -5'
16165 5' -55.4 NC_004065.1 + 192820 0.66 0.96582
Target:  5'- gUCUGGGCGcugCGCuugaggcagccgcuCUCGGugacgGCGGCGGAg -3'
miRNA:   3'- gAGACCUGUa--GUG--------------GAGCC-----UGCUGCCU- -5'
16165 5' -55.4 NC_004065.1 + 28303 0.67 0.960253
Target:  5'- --aUGGACAa-AUCUCGGAuCGACGGc -3'
miRNA:   3'- gagACCUGUagUGGAGCCU-GCUGCCu -5'
16165 5' -55.4 NC_004065.1 + 204534 0.67 0.960253
Target:  5'- ----cGugGUCGCCagacgccucgUCGGGCGGCGGGa -3'
miRNA:   3'- gagacCugUAGUGG----------AGCCUGCUGCCU- -5'
16165 5' -55.4 NC_004065.1 + 19405 0.67 0.956702
Target:  5'- ---gGGACGUUACCcgcCGGcguCGGCGGAg -3'
miRNA:   3'- gagaCCUGUAGUGGa--GCCu--GCUGCCU- -5'
16165 5' -55.4 NC_004065.1 + 179719 0.67 0.956702
Target:  5'- uCUCUGuuguugccucGCgAUCGCCgcgCGGACGGCGGu -3'
miRNA:   3'- -GAGACc---------UG-UAGUGGa--GCCUGCUGCCu -5'
16165 5' -55.4 NC_004065.1 + 119980 0.67 0.952939
Target:  5'- cCUCUGGAgCG-CGCCgagCGGguggaagaacACGGCGGGc -3'
miRNA:   3'- -GAGACCU-GUaGUGGa--GCC----------UGCUGCCU- -5'
16165 5' -55.4 NC_004065.1 + 25932 0.67 0.952939
Target:  5'- gUCUcGGAaaccaCGUCuCCUCGGACGACa-- -3'
miRNA:   3'- gAGA-CCU-----GUAGuGGAGCCUGCUGccu -5'
16165 5' -55.4 NC_004065.1 + 38499 0.67 0.952939
Target:  5'- -gCUGGACGUgGaCCUCGGGauCGAgcUGGAg -3'
miRNA:   3'- gaGACCUGUAgU-GGAGCCU--GCU--GCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.