miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16166 3' -52 NC_004065.1 + 140556 0.66 0.996224
Target:  5'- gCUUCCUCUagCGGcgGGCUggaGUGGAGugAc -3'
miRNA:   3'- -GGAGGAGAg-GCCa-CUGA---UAUCUCugU- -5'
16166 3' -52 NC_004065.1 + 192681 0.67 0.994115
Target:  5'- uCUUCCUCUgCGGUgGGCUGcuccGGAuGACGg -3'
miRNA:   3'- -GGAGGAGAgGCCA-CUGAUa---UCU-CUGU- -5'
16166 3' -52 NC_004065.1 + 146809 0.67 0.991144
Target:  5'- gCUCCUC-CCGGcGGCgcgcacgGGGGACu -3'
miRNA:   3'- gGAGGAGaGGCCaCUGaua----UCUCUGu -5'
16166 3' -52 NC_004065.1 + 20903 0.68 0.987101
Target:  5'- gUCUCgUCaCCGGUGAuaCUGUGGAuGACu -3'
miRNA:   3'- -GGAGgAGaGGCCACU--GAUAUCU-CUGu -5'
16166 3' -52 NC_004065.1 + 18235 0.68 0.985477
Target:  5'- cCCgcgCCUCUCCGGagucgucucccGACU--GGAGGCGu -3'
miRNA:   3'- -GGa--GGAGAGGCCa----------CUGAuaUCUCUGU- -5'
16166 3' -52 NC_004065.1 + 49413 0.68 0.985477
Target:  5'- -aUCCUCguUCCGGaGACgg-AGGGACGa -3'
miRNA:   3'- ggAGGAG--AGGCCaCUGauaUCUCUGU- -5'
16166 3' -52 NC_004065.1 + 80395 0.68 0.985477
Target:  5'- gCCUgCCgacggCgCCGGUGACgGUGGAcGACAa -3'
miRNA:   3'- -GGA-GGa----GaGGCCACUGaUAUCU-CUGU- -5'
16166 3' -52 NC_004065.1 + 208873 0.69 0.977384
Target:  5'- -aUCCUCgCCGG-GGCUGUguuguuuaacAGGGACAu -3'
miRNA:   3'- ggAGGAGaGGCCaCUGAUA----------UCUCUGU- -5'
16166 3' -52 NC_004065.1 + 102611 0.72 0.906391
Target:  5'- gCUCCUCgucgaCGGUGACggccugggAGAGGCGg -3'
miRNA:   3'- gGAGGAGag---GCCACUGaua-----UCUCUGU- -5'
16166 3' -52 NC_004065.1 + 3639 0.73 0.87292
Target:  5'- aCCUCCgcgcUCUCCGaGUGGCUc--GAGGCGa -3'
miRNA:   3'- -GGAGG----AGAGGC-CACUGAuauCUCUGU- -5'
16166 3' -52 NC_004065.1 + 198752 0.79 0.563393
Target:  5'- uCCUCCUCUCCGuccGUGGCgaccgcAGAGACGa -3'
miRNA:   3'- -GGAGGAGAGGC---CACUGaua---UCUCUGU- -5'
16166 3' -52 NC_004065.1 + 164007 1.11 0.008873
Target:  5'- cCCUCCUCUCCGGUGACUAUAGAGACAc -3'
miRNA:   3'- -GGAGGAGAGGCCACUGAUAUCUCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.