miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16166 5' -48.3 NC_004065.1 + 29932 0.66 0.999919
Target:  5'- --gGGCUcGAUAuccgCUGAGGAGGAg -3'
miRNA:   3'- uuaCUGAaCUAUcuuaGGCUCCUCCU- -5'
16166 5' -48.3 NC_004065.1 + 44099 0.66 0.999894
Target:  5'- cGUGGag-GGUcgccaccGAGUCUGAGGAGGAa -3'
miRNA:   3'- uUACUgaaCUAu------CUUAGGCUCCUCCU- -5'
16166 5' -48.3 NC_004065.1 + 45857 0.66 0.999894
Target:  5'- --gGACgcGAUGGccgcUCCGAcGGAGGAa -3'
miRNA:   3'- uuaCUGaaCUAUCuu--AGGCU-CCUCCU- -5'
16166 5' -48.3 NC_004065.1 + 130279 0.66 0.999862
Target:  5'- --aGAUcagGGUGGAG-CgCGAGGAGGAc -3'
miRNA:   3'- uuaCUGaa-CUAUCUUaG-GCUCCUCCU- -5'
16166 5' -48.3 NC_004065.1 + 57590 0.66 0.999851
Target:  5'- gAcgGACUUGGUAGAuuucgauaacccgaGgcugCCGAGGcacaAGGAg -3'
miRNA:   3'- -UuaCUGAACUAUCU--------------Ua---GGCUCC----UCCU- -5'
16166 5' -48.3 NC_004065.1 + 172083 0.66 0.999773
Target:  5'- --gGGCUgugGGUGGAGgggCCGgGGGAGGc -3'
miRNA:   3'- uuaCUGAa--CUAUCUUa--GGC-UCCUCCu -5'
16166 5' -48.3 NC_004065.1 + 189550 0.67 0.999432
Target:  5'- --cGACUgggGGuUAGAGUCCGAGcucgagagcGAGGGa -3'
miRNA:   3'- uuaCUGAa--CU-AUCUUAGGCUC---------CUCCU- -5'
16166 5' -48.3 NC_004065.1 + 140467 0.67 0.999297
Target:  5'- aGGUGACgggGggAGAugaggaCGAGGAGGAu -3'
miRNA:   3'- -UUACUGaa-CuaUCUuag---GCUCCUCCU- -5'
16166 5' -48.3 NC_004065.1 + 130741 0.68 0.998448
Target:  5'- --gGGC--GGUGGGAUCggaCGAGGAGGAg -3'
miRNA:   3'- uuaCUGaaCUAUCUUAG---GCUCCUCCU- -5'
16166 5' -48.3 NC_004065.1 + 186862 0.68 0.998135
Target:  5'- aGAUGuuuauCaUGGUGGAcgCCGGGGGGGc -3'
miRNA:   3'- -UUACu----GaACUAUCUuaGGCUCCUCCu -5'
16166 5' -48.3 NC_004065.1 + 184719 0.68 0.998135
Target:  5'- cGUGGCUgccGAUGcugucGAUCgGAGGAGGAa -3'
miRNA:   3'- uUACUGAa--CUAUc----UUAGgCUCCUCCU- -5'
16166 5' -48.3 NC_004065.1 + 75215 0.69 0.997769
Target:  5'- --gGACUUGAcgAGGG-CCGAgcaGGAGGAc -3'
miRNA:   3'- uuaCUGAACUa-UCUUaGGCU---CCUCCU- -5'
16166 5' -48.3 NC_004065.1 + 189850 0.69 0.997345
Target:  5'- -cUGAggUGGUGGAAUCCGAccGGGAu -3'
miRNA:   3'- uuACUgaACUAUCUUAGGCUccUCCU- -5'
16166 5' -48.3 NC_004065.1 + 185216 0.69 0.996857
Target:  5'- uGGUGGCgcgg-AGAAUCCGuaucGGAGGAc -3'
miRNA:   3'- -UUACUGaacuaUCUUAGGCu---CCUCCU- -5'
16166 5' -48.3 NC_004065.1 + 28710 0.69 0.995656
Target:  5'- --cGGCagGGcGGAgauccuGUCCGAGGAGGAg -3'
miRNA:   3'- uuaCUGaaCUaUCU------UAGGCUCCUCCU- -5'
16166 5' -48.3 NC_004065.1 + 168255 0.7 0.993177
Target:  5'- uGAUGAUgaUGAUGguucauccucuGAGUCgGAGGAGGAu -3'
miRNA:   3'- -UUACUGa-ACUAU-----------CUUAGgCUCCUCCU- -5'
16166 5' -48.3 NC_004065.1 + 204082 0.7 0.993177
Target:  5'- ---aAC-UGAUGucGUCCGAGGAGGAc -3'
miRNA:   3'- uuacUGaACUAUcuUAGGCUCCUCCU- -5'
16166 5' -48.3 NC_004065.1 + 165367 0.71 0.990972
Target:  5'- -uUGugUuuggUGGUGGAGUUgGAGGAGGu -3'
miRNA:   3'- uuACugA----ACUAUCUUAGgCUCCUCCu -5'
16166 5' -48.3 NC_004065.1 + 229134 0.72 0.983782
Target:  5'- gAGUGACaacagccuacuugGGUGGGAUCCucGGGGAGGAu -3'
miRNA:   3'- -UUACUGaa-----------CUAUCUUAGG--CUCCUCCU- -5'
16166 5' -48.3 NC_004065.1 + 164042 1.08 0.026367
Target:  5'- uAAUGACUUGAUAGAAUCCGAGGAGGAa -3'
miRNA:   3'- -UUACUGAACUAUCUUAGGCUCCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.