miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16167 3' -52.5 NC_004065.1 + 154000 0.66 0.995604
Target:  5'- aGCCCUCGUGGucacgUUgGCCgacauCGAg -3'
miRNA:   3'- cCGGGAGUACCua---GAgCGGaaau-GCU- -5'
16167 3' -52.5 NC_004065.1 + 115439 0.66 0.995604
Target:  5'- aGCCCUCGUaGGGcacUC-CGCCgc-GCGGg -3'
miRNA:   3'- cCGGGAGUA-CCU---AGaGCGGaaaUGCU- -5'
16167 3' -52.5 NC_004065.1 + 101082 0.66 0.994903
Target:  5'- cGCCgguCUCG-GGcguuUCUCGCCUUgGCGAa -3'
miRNA:   3'- cCGG---GAGUaCCu---AGAGCGGAAaUGCU- -5'
16167 3' -52.5 NC_004065.1 + 71034 0.66 0.994829
Target:  5'- -cCCCUCAcgGGAcaaggaagaagccUCUCGCCg--ACGGc -3'
miRNA:   3'- ccGGGAGUa-CCU-------------AGAGCGGaaaUGCU- -5'
16167 3' -52.5 NC_004065.1 + 31421 0.67 0.989926
Target:  5'- cGGCCgUUUcgGGAUCUC-CCg--ACGAu -3'
miRNA:   3'- -CCGG-GAGuaCCUAGAGcGGaaaUGCU- -5'
16167 3' -52.5 NC_004065.1 + 224624 0.67 0.989926
Target:  5'- cGGCCCUCcacgGGGuuguUCUCGCUccacuCGAu -3'
miRNA:   3'- -CCGGGAGua--CCU----AGAGCGGaaau-GCU- -5'
16167 3' -52.5 NC_004065.1 + 130896 0.67 0.987101
Target:  5'- aGGUCCUCAugaggugugUGGAgCUCGCCgccAgGAa -3'
miRNA:   3'- -CCGGGAGU---------ACCUaGAGCGGaaaUgCU- -5'
16167 3' -52.5 NC_004065.1 + 173197 0.67 0.987101
Target:  5'- cGGCaCCUCGUGGAcgagauuggUCUcCGUCcg-ACGAu -3'
miRNA:   3'- -CCG-GGAGUACCU---------AGA-GCGGaaaUGCU- -5'
16167 3' -52.5 NC_004065.1 + 149550 0.67 0.985477
Target:  5'- aGCCCUUuugaaggccguUGGAgccCUCGCCgcgaacgUUACGAa -3'
miRNA:   3'- cCGGGAGu----------ACCUa--GAGCGGa------AAUGCU- -5'
16167 3' -52.5 NC_004065.1 + 67760 0.67 0.985477
Target:  5'- cGCCCgaaaUGUGGGUCUucCGCCUcgUUACGc -3'
miRNA:   3'- cCGGGa---GUACCUAGA--GCGGA--AAUGCu -5'
16167 3' -52.5 NC_004065.1 + 114992 0.68 0.983701
Target:  5'- cGGCCCUggcggccgCGcGGAUCUgcgagaUGUCUUUGCGGa -3'
miRNA:   3'- -CCGGGA--------GUaCCUAGA------GCGGAAAUGCU- -5'
16167 3' -52.5 NC_004065.1 + 168414 0.68 0.983515
Target:  5'- -aCCCgUCGugcgaccUGGAUCUCGCCgaaugUUACGu -3'
miRNA:   3'- ccGGG-AGU-------ACCUAGAGCGGa----AAUGCu -5'
16167 3' -52.5 NC_004065.1 + 76702 0.68 0.981766
Target:  5'- aGGCCCUUcuccaGGAUC-CGCCgauguaUACGGu -3'
miRNA:   3'- -CCGGGAGua---CCUAGaGCGGaa----AUGCU- -5'
16167 3' -52.5 NC_004065.1 + 109669 0.68 0.977384
Target:  5'- gGGUCCUCcgGGcgCUCuCCg--ACGAc -3'
miRNA:   3'- -CCGGGAGuaCCuaGAGcGGaaaUGCU- -5'
16167 3' -52.5 NC_004065.1 + 85348 0.68 0.977384
Target:  5'- cGGCCUUCGUGGugacgCUCGugacCCacUACGAg -3'
miRNA:   3'- -CCGGGAGUACCua---GAGC----GGaaAUGCU- -5'
16167 3' -52.5 NC_004065.1 + 111921 0.68 0.974924
Target:  5'- aGGCUgugUCGgaGGGUCUCGCCUUU-CGGg -3'
miRNA:   3'- -CCGGg--AGUa-CCUAGAGCGGAAAuGCU- -5'
16167 3' -52.5 NC_004065.1 + 15014 0.69 0.962783
Target:  5'- cGGCCCUC-UGGAauuggaauauacgUUUCGCCUgagACc- -3'
miRNA:   3'- -CCGGGAGuACCU-------------AGAGCGGAaa-UGcu -5'
16167 3' -52.5 NC_004065.1 + 79611 0.71 0.918181
Target:  5'- cGCCC-CcgGGAUCacgucuccaUCGCCUcgUGCGAg -3'
miRNA:   3'- cCGGGaGuaCCUAG---------AGCGGAa-AUGCU- -5'
16167 3' -52.5 NC_004065.1 + 41279 0.71 0.912403
Target:  5'- cGCCCUgGUGGGcUUCGCCgccgUGCGc -3'
miRNA:   3'- cCGGGAgUACCUaGAGCGGaa--AUGCu -5'
16167 3' -52.5 NC_004065.1 + 6764 0.71 0.906391
Target:  5'- cGGUCCUCGUGGucCUCGCUgugUAcCGAc -3'
miRNA:   3'- -CCGGGAGUACCuaGAGCGGaa-AU-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.