miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16167 5' -56.1 NC_004065.1 + 75777 0.66 0.962443
Target:  5'- aGGCGG--AGG-CGGcGGUCggcGAGGGGGa -3'
miRNA:   3'- -CCGCCacUUCaGCC-CUAGa--CUCCCUC- -5'
16167 5' -56.1 NC_004065.1 + 23607 0.66 0.955421
Target:  5'- aGGCGGUGAGG-CGGGcag-GcGGGuGg -3'
miRNA:   3'- -CCGCCACUUCaGCCCuagaCuCCCuC- -5'
16167 5' -56.1 NC_004065.1 + 55438 0.66 0.951596
Target:  5'- cGCGGgucuucGAGUCGGcg-CUGGGGGAa -3'
miRNA:   3'- cCGCCac----UUCAGCCcuaGACUCCCUc -5'
16167 5' -56.1 NC_004065.1 + 35600 0.67 0.942864
Target:  5'- cGGCGGUGucGGUgCGGGAUCcacgGcggcggcggcggcGGGGAu -3'
miRNA:   3'- -CCGCCACu-UCA-GCCCUAGa---C-------------UCCCUc -5'
16167 5' -56.1 NC_004065.1 + 143297 0.67 0.938828
Target:  5'- aGGCGGcgucgGggGcCGGGGcagGAGGGGa -3'
miRNA:   3'- -CCGCCa----CuuCaGCCCUagaCUCCCUc -5'
16167 5' -56.1 NC_004065.1 + 143339 0.67 0.938828
Target:  5'- gGGCGGcgGcAGGgcgaGGGAacaCUGGGGGGGa -3'
miRNA:   3'- -CCGCCa-C-UUCag--CCCUa--GACUCCCUC- -5'
16167 5' -56.1 NC_004065.1 + 116883 0.67 0.923552
Target:  5'- uGGCGuGccugcugacgcUGggGcgCGGGAUCgagcugcugauccUGAGGGAGa -3'
miRNA:   3'- -CCGC-C-----------ACuuCa-GCCCUAG-------------ACUCCCUC- -5'
16167 5' -56.1 NC_004065.1 + 170159 0.68 0.895074
Target:  5'- cGCGucGggGUCGGGAaaUgUGAGGGGa -3'
miRNA:   3'- cCGCcaCuuCAGCCCU--AgACUCCCUc -5'
16167 5' -56.1 NC_004065.1 + 204341 0.68 0.895074
Target:  5'- cGUGGU--AGUCGGGGacgUCgugaugGGGGGAGg -3'
miRNA:   3'- cCGCCAcuUCAGCCCU---AGa-----CUCCCUC- -5'
16167 5' -56.1 NC_004065.1 + 52483 0.69 0.875095
Target:  5'- uGGCGGUGggGUguUGGGcgCUGuuGGc- -3'
miRNA:   3'- -CCGCCACuuCA--GCCCuaGACucCCuc -5'
16167 5' -56.1 NC_004065.1 + 75596 0.69 0.858542
Target:  5'- cGGCGGgggGAGGcCGcuGGGUCUgguccugaucccgcGAGGGAGc -3'
miRNA:   3'- -CCGCCa--CUUCaGC--CCUAGA--------------CUCCCUC- -5'
16167 5' -56.1 NC_004065.1 + 84350 0.7 0.804866
Target:  5'- cGGCGGUcgucGAAucCGGGAUCgugucGAGGGAa -3'
miRNA:   3'- -CCGCCA----CUUcaGCCCUAGa----CUCCCUc -5'
16167 5' -56.1 NC_004065.1 + 225872 0.71 0.796242
Target:  5'- gGGCGGagguccgGAcuuGGUCuucGGGUCUGAGGGAc -3'
miRNA:   3'- -CCGCCa------CU---UCAGc--CCUAGACUCCCUc -5'
16167 5' -56.1 NC_004065.1 + 161839 0.73 0.694063
Target:  5'- gGGCGGacGggGaCGGGuUCgGAGGGAGu -3'
miRNA:   3'- -CCGCCa-CuuCaGCCCuAGaCUCCCUC- -5'
16167 5' -56.1 NC_004065.1 + 121998 0.76 0.508154
Target:  5'- cGCGGUGuugucgaAGGUCGGGAggUCggGAGGGGGc -3'
miRNA:   3'- cCGCCAC-------UUCAGCCCU--AGa-CUCCCUC- -5'
16167 5' -56.1 NC_004065.1 + 165374 0.77 0.445509
Target:  5'- uGGUGGUGGAGUUGGaGGagguUgUGGGGGAGa -3'
miRNA:   3'- -CCGCCACUUCAGCC-CU----AgACUCCCUC- -5'
16167 5' -56.1 NC_004065.1 + 136816 0.79 0.34781
Target:  5'- gGGCGGggaaggGAGGggGGGGUUUGGGGGGGg -3'
miRNA:   3'- -CCGCCa-----CUUCagCCCUAGACUCCCUC- -5'
16167 5' -56.1 NC_004065.1 + 164233 1.1 0.004119
Target:  5'- cGGCGGUGAAGUCGGGAUCUGAGGGAGc -3'
miRNA:   3'- -CCGCCACUUCAGCCCUAGACUCCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.