miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16169 3' -58 NC_004065.1 + 87093 0.66 0.938754
Target:  5'- -cUGGCCcugGUGC-CGGAACUCGaCGGCc -3'
miRNA:   3'- gcACUGG---CACGaGCCUUGGGC-GCUGc -5'
16169 3' -58 NC_004065.1 + 220893 0.66 0.938754
Target:  5'- uGUGGuCCGUGuCUCGGuGCUcgauCGCGAUc -3'
miRNA:   3'- gCACU-GGCAC-GAGCCuUGG----GCGCUGc -5'
16169 3' -58 NC_004065.1 + 208044 0.66 0.938754
Target:  5'- gCGUGGCCGUGg-CGGcccucaccguCCUGcCGACGa -3'
miRNA:   3'- -GCACUGGCACgaGCCuu--------GGGC-GCUGC- -5'
16169 3' -58 NC_004065.1 + 84708 0.66 0.938754
Target:  5'- uGUcGAgUGUcGCUCGGcACCCgaaGCGGCGa -3'
miRNA:   3'- gCA-CUgGCA-CGAGCCuUGGG---CGCUGC- -5'
16169 3' -58 NC_004065.1 + 18099 0.66 0.938754
Target:  5'- uCGUGGCCG-GCaucucugucgCGGAagaaccuccggGCCCGCcGCGg -3'
miRNA:   3'- -GCACUGGCaCGa---------GCCU-----------UGGGCGcUGC- -5'
16169 3' -58 NC_004065.1 + 229231 0.66 0.938304
Target:  5'- aCGUGGCaacacucgaacagCGgaggaacGCUCGaaggucgagcgcGAACCCGCGACGc -3'
miRNA:   3'- -GCACUG-------------GCa------CGAGC------------CUUGGGCGCUGC- -5'
16169 3' -58 NC_004065.1 + 50845 0.66 0.934155
Target:  5'- aCGUGaacGCCGgGCgCGGGGCCUcUGACGg -3'
miRNA:   3'- -GCAC---UGGCaCGaGCCUUGGGcGCUGC- -5'
16169 3' -58 NC_004065.1 + 211620 0.66 0.934155
Target:  5'- cCG-GACCGUGUucaUCGGAcaugaAUCCGUG-CGg -3'
miRNA:   3'- -GCaCUGGCACG---AGCCU-----UGGGCGCuGC- -5'
16169 3' -58 NC_004065.1 + 77580 0.66 0.934155
Target:  5'- uCGUcGAaaGUGC-CGGuguACCCGaCGACGc -3'
miRNA:   3'- -GCA-CUggCACGaGCCu--UGGGC-GCUGC- -5'
16169 3' -58 NC_004065.1 + 78062 0.66 0.931293
Target:  5'- gCGUGAUCGggguguacaaacaccUGUUCGcGGACCCGCugugcGCGg -3'
miRNA:   3'- -GCACUGGC---------------ACGAGC-CUUGGGCGc----UGC- -5'
16169 3' -58 NC_004065.1 + 61387 0.66 0.929343
Target:  5'- gGUcGCCGcGC-CGGcuccGCCCGCGGCa -3'
miRNA:   3'- gCAcUGGCaCGaGCCu---UGGGCGCUGc -5'
16169 3' -58 NC_004065.1 + 1238 0.66 0.924318
Target:  5'- gGUGAgCUGUGCUcCGGcgguuCCCGCGucCGu -3'
miRNA:   3'- gCACU-GGCACGA-GCCuu---GGGCGCu-GC- -5'
16169 3' -58 NC_004065.1 + 170317 0.66 0.924318
Target:  5'- cCGUGcGCCGcggccGCUCGGcGCCCuucuaCGACGa -3'
miRNA:   3'- -GCAC-UGGCa----CGAGCCuUGGGc----GCUGC- -5'
16169 3' -58 NC_004065.1 + 181663 0.66 0.924318
Target:  5'- ---cGCCGUGgUCGGAuacaaGgCCGCGACc -3'
miRNA:   3'- gcacUGGCACgAGCCU-----UgGGCGCUGc -5'
16169 3' -58 NC_004065.1 + 153199 0.66 0.924318
Target:  5'- --aGGCCcUGUacaUCGcGAGCgCCGCGACGg -3'
miRNA:   3'- gcaCUGGcACG---AGC-CUUG-GGCGCUGC- -5'
16169 3' -58 NC_004065.1 + 56914 0.66 0.91908
Target:  5'- --cGGCUGcGgUCGGAACCgCGCGuCGg -3'
miRNA:   3'- gcaCUGGCaCgAGCCUUGG-GCGCuGC- -5'
16169 3' -58 NC_004065.1 + 43078 0.66 0.91908
Target:  5'- --aGACCGcacGUUCGGAcgguccgggcAUCCGCGACc -3'
miRNA:   3'- gcaCUGGCa--CGAGCCU----------UGGGCGCUGc -5'
16169 3' -58 NC_004065.1 + 16112 0.66 0.91908
Target:  5'- aCGuUGACCGUGCUCGacacGCCgGUGGu- -3'
miRNA:   3'- -GC-ACUGGCACGAGCcu--UGGgCGCUgc -5'
16169 3' -58 NC_004065.1 + 225782 0.66 0.916926
Target:  5'- -aUGACCGUGCaugaaacgcagaGGGucCCCGCGGCc -3'
miRNA:   3'- gcACUGGCACGag----------CCUu-GGGCGCUGc -5'
16169 3' -58 NC_004065.1 + 127018 0.66 0.91363
Target:  5'- aCGUG-CCGcGCUCGGAccuaaaGCUCGUcaagGGCGg -3'
miRNA:   3'- -GCACuGGCaCGAGCCU------UGGGCG----CUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.