miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16169 5' -58.4 NC_004065.1 + 94388 0.66 0.89398
Target:  5'- --gGUCGCUGUCggCCGAGgCaCUGCUc -3'
miRNA:   3'- uagCAGCGGCAGa-GGCUC-GaGACGAc -5'
16169 5' -58.4 NC_004065.1 + 171442 0.66 0.89398
Target:  5'- -cCGcCGUCGUCggCGAGCUCauccGCUGg -3'
miRNA:   3'- uaGCaGCGGCAGagGCUCGAGa---CGAC- -5'
16169 5' -58.4 NC_004065.1 + 93952 0.66 0.887488
Target:  5'- -cCGaUUGCCGuUCUCCGAGCg--GCUc -3'
miRNA:   3'- uaGC-AGCGGC-AGAGGCUCGagaCGAc -5'
16169 5' -58.4 NC_004065.1 + 31134 0.66 0.887488
Target:  5'- -cCGUCuCCGUCUCCGA-CUCggGCa- -3'
miRNA:   3'- uaGCAGcGGCAGAGGCUcGAGa-CGac -5'
16169 5' -58.4 NC_004065.1 + 88597 0.66 0.887488
Target:  5'- cUCGUCGCgGccCUCCauGAGCUCgGCg- -3'
miRNA:   3'- uAGCAGCGgCa-GAGG--CUCGAGaCGac -5'
16169 5' -58.4 NC_004065.1 + 146462 0.66 0.880787
Target:  5'- -cCGUCGCCGUCuacUCCGuGCcCUgGCg- -3'
miRNA:   3'- uaGCAGCGGCAG---AGGCuCGaGA-CGac -5'
16169 5' -58.4 NC_004065.1 + 158350 0.66 0.880787
Target:  5'- -cCGUUGCCGcCgCCGcuGCUgCUGCUGa -3'
miRNA:   3'- uaGCAGCGGCaGaGGCu-CGA-GACGAC- -5'
16169 5' -58.4 NC_004065.1 + 203410 0.66 0.880787
Target:  5'- -cUGUCGCCGcaCUCCGA-CUCUGUc- -3'
miRNA:   3'- uaGCAGCGGCa-GAGGCUcGAGACGac -5'
16169 5' -58.4 NC_004065.1 + 168210 0.66 0.86677
Target:  5'- -aCGaCGCCGUCgagUCCGuGCgCUGCUa -3'
miRNA:   3'- uaGCaGCGGCAG---AGGCuCGaGACGAc -5'
16169 5' -58.4 NC_004065.1 + 177440 0.66 0.859465
Target:  5'- -cUGUCGCCaUCgCCGAuGCUCUGgaGa -3'
miRNA:   3'- uaGCAGCGGcAGaGGCU-CGAGACgaC- -5'
16169 5' -58.4 NC_004065.1 + 96634 0.66 0.859465
Target:  5'- cUCGUCGCCGgcggUCgCGAGCUCUuucucgGCg- -3'
miRNA:   3'- uAGCAGCGGCag--AG-GCUCGAGA------CGac -5'
16169 5' -58.4 NC_004065.1 + 172189 0.67 0.851969
Target:  5'- cGUCGUCgGUCGUCUCCGgaGGgaC-GCUGa -3'
miRNA:   3'- -UAGCAG-CGGCAGAGGC--UCgaGaCGAC- -5'
16169 5' -58.4 NC_004065.1 + 91471 0.67 0.844287
Target:  5'- -cCGUCGCCGUCagUCCGccgccGCUCgUGCc- -3'
miRNA:   3'- uaGCAGCGGCAG--AGGCu----CGAG-ACGac -5'
16169 5' -58.4 NC_004065.1 + 189797 0.67 0.836426
Target:  5'- uGUCGUCGUCGUCcaccCCGuuGUUCUGUa- -3'
miRNA:   3'- -UAGCAGCGGCAGa---GGCu-CGAGACGac -5'
16169 5' -58.4 NC_004065.1 + 139115 0.67 0.828392
Target:  5'- gGUCGaCGCgGUCugcUCCGAGCUC-GCg- -3'
miRNA:   3'- -UAGCaGCGgCAG---AGGCUCGAGaCGac -5'
16169 5' -58.4 NC_004065.1 + 153993 0.67 0.820192
Target:  5'- gAUCGUUGUCGUCUCUGucguGUUCgcgGCg- -3'
miRNA:   3'- -UAGCAGCGGCAGAGGCu---CGAGa--CGac -5'
16169 5' -58.4 NC_004065.1 + 57764 0.67 0.811832
Target:  5'- cGUCGUCGCCGcCgCCGucGCUCUcGgUGg -3'
miRNA:   3'- -UAGCAGCGGCaGaGGCu-CGAGA-CgAC- -5'
16169 5' -58.4 NC_004065.1 + 148990 0.68 0.803321
Target:  5'- gAUCG-CGCagCGUCU-CGAGCUuCUGCUGc -3'
miRNA:   3'- -UAGCaGCG--GCAGAgGCUCGA-GACGAC- -5'
16169 5' -58.4 NC_004065.1 + 126106 0.68 0.803321
Target:  5'- cUCGgguaaGuCCuUCUgCGAGCUCUGCUGg -3'
miRNA:   3'- uAGCag---C-GGcAGAgGCUCGAGACGAC- -5'
16169 5' -58.4 NC_004065.1 + 78915 0.68 0.803321
Target:  5'- uUCGcugcUGCCGUCgucgCCGAGCUCggGCg- -3'
miRNA:   3'- uAGCa---GCGGCAGa---GGCUCGAGa-CGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.