miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1617 3' -64.6 NC_001347.2 + 2145 0.66 0.65144
Target:  5'- cGCaCGCGgUGGUCGGGgCGGacGCGGCa -3'
miRNA:   3'- aUGaGCGCgGUCGGCCUgGCC--CGCCG- -5'
1617 3' -64.6 NC_001347.2 + 85056 0.66 0.65144
Target:  5'- -cCUCGCGCUcgcggaagauGGCCGaGACCaGGUagacgguaGGCa -3'
miRNA:   3'- auGAGCGCGG----------UCGGC-CUGGcCCG--------CCG- -5'
1617 3' -64.6 NC_001347.2 + 38677 0.66 0.65144
Target:  5'- --gUCGUGCCGGCCcaccGCCGGcGCaGCu -3'
miRNA:   3'- augAGCGCGGUCGGcc--UGGCC-CGcCG- -5'
1617 3' -64.6 NC_001347.2 + 81022 0.66 0.65144
Target:  5'- cGCUCGuCGCCccagaccaacAGCac-GCCGGGCGcGCu -3'
miRNA:   3'- aUGAGC-GCGG----------UCGgccUGGCCCGC-CG- -5'
1617 3' -64.6 NC_001347.2 + 16712 0.66 0.642018
Target:  5'- cGCUCGcCGCCccugcagcgucuAGCCGGugaaaucuACCGGcUGGCc -3'
miRNA:   3'- aUGAGC-GCGG------------UCGGCC--------UGGCCcGCCG- -5'
1617 3' -64.6 NC_001347.2 + 142 0.66 0.642018
Target:  5'- cGCggGCGUguGCCGGgugugucguGCCGGGUgugucgcgGGCg -3'
miRNA:   3'- aUGagCGCGguCGGCC---------UGGCCCG--------CCG- -5'
1617 3' -64.6 NC_001347.2 + 229621 0.66 0.642018
Target:  5'- cGCggGCGUguGCCGGgugugucguGCCGGGUgugucgcgGGCg -3'
miRNA:   3'- aUGagCGCGguCGGCC---------UGGCCCG--------CCG- -5'
1617 3' -64.6 NC_001347.2 + 136173 0.66 0.636361
Target:  5'- gAC-CGCaGCaCGGCCGGaacccuGCCgcggacugcgccgggGGGCGGCg -3'
miRNA:   3'- aUGaGCG-CG-GUCGGCC------UGG---------------CCCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 75397 0.66 0.632589
Target:  5'- cGCUCcaaGCGggAGCgGcGGCCGuGGCGGCg -3'
miRNA:   3'- aUGAG---CGCggUCGgC-CUGGC-CCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 100885 0.66 0.62316
Target:  5'- gGCgcaGCGCCGGCCauucuCCGGGUcGCg -3'
miRNA:   3'- aUGag-CGCGGUCGGccu--GGCCCGcCG- -5'
1617 3' -64.6 NC_001347.2 + 21615 0.66 0.62316
Target:  5'- uUGCUgaUGUGCCAGCCGucgccgcaGGCCuuugucGGcGCGGCu -3'
miRNA:   3'- -AUGA--GCGCGGUCGGC--------CUGG------CC-CGCCG- -5'
1617 3' -64.6 NC_001347.2 + 189863 0.66 0.62316
Target:  5'- aGCgguagCGCGCCGGgucgccuguCCGGcagcaGCCGGGCcGCc -3'
miRNA:   3'- aUGa----GCGCGGUC---------GGCC-----UGGCCCGcCG- -5'
1617 3' -64.6 NC_001347.2 + 173807 0.66 0.62316
Target:  5'- cUACcUGaCGUCcaaAGgUGGAUCGGGCGGCg -3'
miRNA:   3'- -AUGaGC-GCGG---UCgGCCUGGCCCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 81591 0.66 0.622218
Target:  5'- --aUCGcCGCCGGCCGGucgcucgcgaaaaGCCGuGGCauugagacgcacGGCg -3'
miRNA:   3'- augAGC-GCGGUCGGCC-------------UGGC-CCG------------CCG- -5'
1617 3' -64.6 NC_001347.2 + 228702 0.66 0.612795
Target:  5'- cGCUUGCGCU-GUCGGcccagucgccaccGCCGcGGCGGa -3'
miRNA:   3'- aUGAGCGCGGuCGGCC-------------UGGC-CCGCCg -5'
1617 3' -64.6 NC_001347.2 + 114377 0.67 0.594932
Target:  5'- aACU-GCGCCAggccuucccgggGCUGGACUuuGaGGCGGCc -3'
miRNA:   3'- aUGAgCGCGGU------------CGGCCUGG--C-CCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 167217 0.67 0.594932
Target:  5'- gGC-CGCGCCGGCCGcGCCGcGaGaCGGa -3'
miRNA:   3'- aUGaGCGCGGUCGGCcUGGC-C-C-GCCg -5'
1617 3' -64.6 NC_001347.2 + 136106 0.67 0.594932
Target:  5'- cGC-CGgGCCucGGCCGGGgaGGGUGGg -3'
miRNA:   3'- aUGaGCgCGG--UCGGCCUggCCCGCCg -5'
1617 3' -64.6 NC_001347.2 + 159281 0.67 0.594932
Target:  5'- aACUgGUGCUGGCgGcGCCGGGCGcCa -3'
miRNA:   3'- aUGAgCGCGGUCGgCcUGGCCCGCcG- -5'
1617 3' -64.6 NC_001347.2 + 194888 0.67 0.585561
Target:  5'- cUGCUgCGCGuaugucagcuCCAcGCCGGuagcaagauccGCCuGGGCGGCu -3'
miRNA:   3'- -AUGA-GCGC----------GGU-CGGCC-----------UGG-CCCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.