Results 21 - 40 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1617 | 3' | -64.6 | NC_001347.2 | + | 117821 | 0.69 | 0.468051 |
Target: 5'- cACU-GCGCCAGCCaGGuagaagaagcACCG-GCGGCc -3' miRNA: 3'- aUGAgCGCGGUCGG-CC----------UGGCcCGCCG- -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 150770 | 0.69 | 0.468051 |
Target: 5'- cUACUCcacCCuGCUGGuGCCGGGUGGCg -3' miRNA: 3'- -AUGAGcgcGGuCGGCC-UGGCCCGCCG- -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 135212 | 0.69 | 0.476698 |
Target: 5'- ----gGCGCCGaccCCGG-CUGGGCGGCc -3' miRNA: 3'- augagCGCGGUc--GGCCuGGCCCGCCG- -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 174185 | 0.69 | 0.477567 |
Target: 5'- gGCgcaGCGCCAGCCuuagcuuucuugacuGGCCGGaCGGCa -3' miRNA: 3'- aUGag-CGCGGUCGGc--------------CUGGCCcGCCG- -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 169129 | 0.68 | 0.485423 |
Target: 5'- cGCgCGCGCCgcgcugcaguGGCUGGACCuGGGCccGCa -3' miRNA: 3'- aUGaGCGCGG----------UCGGCCUGG-CCCGc-CG- -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 76617 | 0.68 | 0.485423 |
Target: 5'- cGCagGCGgCGGCUGcGGCCGcGGCGGa -3' miRNA: 3'- aUGagCGCgGUCGGC-CUGGC-CCGCCg -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 117868 | 0.68 | 0.491576 |
Target: 5'- gAC-CGCGUCAGaCGGggcgaccacgucagACgGGGCGGCg -3' miRNA: 3'- aUGaGCGCGGUCgGCC--------------UGgCCCGCCG- -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 171708 | 0.68 | 0.494224 |
Target: 5'- gUGCU-GCGCgAGuuGGugACCGaGGCGGUg -3' miRNA: 3'- -AUGAgCGCGgUCggCC--UGGC-CCGCCG- -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 2387 | 0.68 | 0.494224 |
Target: 5'- gAgUCgGCGCCcgccGCCGaGGCCGcgcGGCGGCu -3' miRNA: 3'- aUgAG-CGCGGu---CGGC-CUGGC---CCGCCG- -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 153844 | 0.68 | 0.512039 |
Target: 5'- cACagCGCGCCAcguccucguguGCCGcGCCGaGCGGCg -3' miRNA: 3'- aUGa-GCGCGGU-----------CGGCcUGGCcCGCCG- -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 30600 | 0.68 | 0.512039 |
Target: 5'- gGCUuccUGCgGCCGGCCgcGGugCcGGCGGCu -3' miRNA: 3'- aUGA---GCG-CGGUCGG--CCugGcCCGCCG- -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 113177 | 0.68 | 0.512039 |
Target: 5'- aACgCGCGCCccAGCC--GCCGGcGUGGCg -3' miRNA: 3'- aUGaGCGCGG--UCGGccUGGCC-CGCCG- -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 78420 | 0.68 | 0.521045 |
Target: 5'- cUGC-CGcCGCCAcCCGG-CCcGGCGGCg -3' miRNA: 3'- -AUGaGC-GCGGUcGGCCuGGcCCGCCG- -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 153241 | 0.68 | 0.530113 |
Target: 5'- gGCgCGCGUCGGCCGGcgacGGCGGUu -3' miRNA: 3'- aUGaGCGCGGUCGGCCuggcCCGCCG- -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 18461 | 0.67 | 0.545657 |
Target: 5'- gGCcugCGCGCCuGCCGGccuuuugaccacauGCCGGccGCGGa -3' miRNA: 3'- aUGa--GCGCGGuCGGCC--------------UGGCC--CGCCg -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 63256 | 0.67 | 0.557641 |
Target: 5'- cGCU-GCGCCcGCCGuGGCCaccaacGGCGGUa -3' miRNA: 3'- aUGAgCGCGGuCGGC-CUGGc-----CCGCCG- -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 139661 | 0.67 | 0.557641 |
Target: 5'- aGC-CGCGUguGCU-GAUCGaGGCGGCg -3' miRNA: 3'- aUGaGCGCGguCGGcCUGGC-CCGCCG- -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 207149 | 0.67 | 0.576219 |
Target: 5'- -gUUUG-GCgAGcCCGGAuCCGGGCGGUc -3' miRNA: 3'- auGAGCgCGgUC-GGCCU-GGCCCGCCG- -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 193298 | 0.67 | 0.576219 |
Target: 5'- gGCUCGUGCguGUC--GCUGGGCuGGCc -3' miRNA: 3'- aUGAGCGCGguCGGccUGGCCCG-CCG- -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 93208 | 0.67 | 0.579952 |
Target: 5'- cGCUCGCGCUGGCgacgagcucgcugagCGG-CaGcGGCGGCa -3' miRNA: 3'- aUGAGCGCGGUCG---------------GCCuGgC-CCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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