miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1617 3' -64.6 NC_001347.2 + 194888 0.67 0.585561
Target:  5'- cUGCUgCGCGuaugucagcuCCAcGCCGGuagcaagauccGCCuGGGCGGCu -3'
miRNA:   3'- -AUGA-GCGC----------GGU-CGGCC-----------UGG-CCCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 93208 0.67 0.579952
Target:  5'- cGCUCGCGCUGGCgacgagcucgcugagCGG-CaGcGGCGGCa -3'
miRNA:   3'- aUGAGCGCGGUCG---------------GCCuGgC-CCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 207149 0.67 0.576219
Target:  5'- -gUUUG-GCgAGcCCGGAuCCGGGCGGUc -3'
miRNA:   3'- auGAGCgCGgUC-GGCCU-GGCCCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 193298 0.67 0.576219
Target:  5'- gGCUCGUGCguGUC--GCUGGGCuGGCc -3'
miRNA:   3'- aUGAGCGCGguCGGccUGGCCCG-CCG- -5'
1617 3' -64.6 NC_001347.2 + 139661 0.67 0.557641
Target:  5'- aGC-CGCGUguGCU-GAUCGaGGCGGCg -3'
miRNA:   3'- aUGaGCGCGguCGGcCUGGC-CCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 63256 0.67 0.557641
Target:  5'- cGCU-GCGCCcGCCGuGGCCaccaacGGCGGUa -3'
miRNA:   3'- aUGAgCGCGGuCGGC-CUGGc-----CCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 18461 0.67 0.545657
Target:  5'- gGCcugCGCGCCuGCCGGccuuuugaccacauGCCGGccGCGGa -3'
miRNA:   3'- aUGa--GCGCGGuCGGCC--------------UGGCC--CGCCg -5'
1617 3' -64.6 NC_001347.2 + 153241 0.68 0.530113
Target:  5'- gGCgCGCGUCGGCCGGcgacGGCGGUu -3'
miRNA:   3'- aUGaGCGCGGUCGGCCuggcCCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 78420 0.68 0.521045
Target:  5'- cUGC-CGcCGCCAcCCGG-CCcGGCGGCg -3'
miRNA:   3'- -AUGaGC-GCGGUcGGCCuGGcCCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 153844 0.68 0.512039
Target:  5'- cACagCGCGCCAcguccucguguGCCGcGCCGaGCGGCg -3'
miRNA:   3'- aUGa-GCGCGGU-----------CGGCcUGGCcCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 113177 0.68 0.512039
Target:  5'- aACgCGCGCCccAGCC--GCCGGcGUGGCg -3'
miRNA:   3'- aUGaGCGCGG--UCGGccUGGCC-CGCCG- -5'
1617 3' -64.6 NC_001347.2 + 30600 0.68 0.512039
Target:  5'- gGCUuccUGCgGCCGGCCgcGGugCcGGCGGCu -3'
miRNA:   3'- aUGA---GCG-CGGUCGG--CCugGcCCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 171708 0.68 0.494224
Target:  5'- gUGCU-GCGCgAGuuGGugACCGaGGCGGUg -3'
miRNA:   3'- -AUGAgCGCGgUCggCC--UGGC-CCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 2387 0.68 0.494224
Target:  5'- gAgUCgGCGCCcgccGCCGaGGCCGcgcGGCGGCu -3'
miRNA:   3'- aUgAG-CGCGGu---CGGC-CUGGC---CCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 117868 0.68 0.491576
Target:  5'- gAC-CGCGUCAGaCGGggcgaccacgucagACgGGGCGGCg -3'
miRNA:   3'- aUGaGCGCGGUCgGCC--------------UGgCCCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 76617 0.68 0.485423
Target:  5'- cGCagGCGgCGGCUGcGGCCGcGGCGGa -3'
miRNA:   3'- aUGagCGCgGUCGGC-CUGGC-CCGCCg -5'
1617 3' -64.6 NC_001347.2 + 169129 0.68 0.485423
Target:  5'- cGCgCGCGCCgcgcugcaguGGCUGGACCuGGGCccGCa -3'
miRNA:   3'- aUGaGCGCGG----------UCGGCCUGG-CCCGc-CG- -5'
1617 3' -64.6 NC_001347.2 + 174185 0.69 0.477567
Target:  5'- gGCgcaGCGCCAGCCuuagcuuucuugacuGGCCGGaCGGCa -3'
miRNA:   3'- aUGag-CGCGGUCGGc--------------CUGGCCcGCCG- -5'
1617 3' -64.6 NC_001347.2 + 135212 0.69 0.476698
Target:  5'- ----gGCGCCGaccCCGG-CUGGGCGGCc -3'
miRNA:   3'- augagCGCGGUc--GGCCuGGCCCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 142570 0.69 0.468051
Target:  5'- gGCg-GCGUCGGCgGGAgCagcggGGGCGGCg -3'
miRNA:   3'- aUGagCGCGGUCGgCCUgG-----CCCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.