miRNA display CGI


Results 41 - 60 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1617 3' -64.6 NC_001347.2 + 142570 0.69 0.468051
Target:  5'- gGCg-GCGUCGGCgGGAgCagcggGGGCGGCg -3'
miRNA:   3'- aUGagCGCGGUCGgCCUgG-----CCCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 150770 0.69 0.468051
Target:  5'- cUACUCcacCCuGCUGGuGCCGGGUGGCg -3'
miRNA:   3'- -AUGAGcgcGGuCGGCC-UGGCCCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 135802 0.69 0.459485
Target:  5'- cAUUcCGCGgCGGgUGGACCGGGaagcCGGCg -3'
miRNA:   3'- aUGA-GCGCgGUCgGCCUGGCCC----GCCG- -5'
1617 3' -64.6 NC_001347.2 + 126856 0.69 0.459485
Target:  5'- cACUCgGCGaCCAGCCcgcacggcuugGGGCUGGcCGGCu -3'
miRNA:   3'- aUGAG-CGC-GGUCGG-----------CCUGGCCcGCCG- -5'
1617 3' -64.6 NC_001347.2 + 112627 0.69 0.442608
Target:  5'- gAgUCGCGCCgacgguaauaGGCCGGugAUgGuGGCGGCg -3'
miRNA:   3'- aUgAGCGCGG----------UCGGCC--UGgC-CCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 210886 0.69 0.434302
Target:  5'- cGC-CGCGCCAGCUGG-CaCGGaGuUGGCg -3'
miRNA:   3'- aUGaGCGCGGUCGGCCuG-GCC-C-GCCG- -5'
1617 3' -64.6 NC_001347.2 + 31668 0.7 0.417965
Target:  5'- gGCUCGgGUCGGCUGG-UCGGGCcgucGCg -3'
miRNA:   3'- aUGAGCgCGGUCGGCCuGGCCCGc---CG- -5'
1617 3' -64.6 NC_001347.2 + 77616 0.7 0.417965
Target:  5'- --gUUGCGCCAGagcgugcaaaCGGgcguGCUGGGCGGCc -3'
miRNA:   3'- augAGCGCGGUCg---------GCC----UGGCCCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 1932 0.7 0.409939
Target:  5'- cUGCcCGCGCgguGGCUGGGCUGcGCGGCg -3'
miRNA:   3'- -AUGaGCGCGg--UCGGCCUGGCcCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 134344 0.7 0.402008
Target:  5'- gACUCGCcUCGGCCaGGggguACCGaGGCGGUg -3'
miRNA:   3'- aUGAGCGcGGUCGG-CC----UGGC-CCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 39788 0.7 0.402008
Target:  5'- cACUggaGCGCaCAGCCGccucCCGGGCGcGCa -3'
miRNA:   3'- aUGAg--CGCG-GUCGGCcu--GGCCCGC-CG- -5'
1617 3' -64.6 NC_001347.2 + 184949 0.7 0.386443
Target:  5'- aGCUCGU--CGGCCGGcgUGGGCGGCu -3'
miRNA:   3'- aUGAGCGcgGUCGGCCugGCCCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 138959 0.7 0.378811
Target:  5'- cGCUaGCGCCGGUgGGGCCc-GCGGCu -3'
miRNA:   3'- aUGAgCGCGGUCGgCCUGGccCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 37983 0.71 0.371281
Target:  5'- cUGCUCGCGguCCAGCuCGGgcagcagccGCCGcGCGGCc -3'
miRNA:   3'- -AUGAGCGC--GGUCG-GCC---------UGGCcCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 1726 0.71 0.370534
Target:  5'- aGCU-GCGCCGGCggUGGGCCGgcacgacGGUGGCg -3'
miRNA:   3'- aUGAgCGCGGUCG--GCCUGGC-------CCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 13499 0.71 0.34931
Target:  5'- cACg-GCGCaacGCCGGgugcucacccGCCGGGCGGCc -3'
miRNA:   3'- aUGagCGCGgu-CGGCC----------UGGCCCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 182181 0.73 0.282911
Target:  5'- aGCgugugUGgGCCGGCCcucggGGugCGGGUGGCg -3'
miRNA:   3'- aUGa----GCgCGGUCGG-----CCugGCCCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 185126 0.73 0.248097
Target:  5'- uUGCggCGCGagCAGCC--GCCGGGCGGCa -3'
miRNA:   3'- -AUGa-GCGCg-GUCGGccUGGCCCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 8158 0.74 0.242652
Target:  5'- aGCUCGUucuccaagucauGCCGGUgGGGCCGGGaCGGg -3'
miRNA:   3'- aUGAGCG------------CGGUCGgCCUGGCCC-GCCg -5'
1617 3' -64.6 NC_001347.2 + 85492 0.76 0.180588
Target:  5'- gUACUCGCG-CAG-CGGuuCGGGCGGCu -3'
miRNA:   3'- -AUGAGCGCgGUCgGCCugGCCCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.