miRNA display CGI


Results 41 - 60 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1617 3' -64.6 NC_001347.2 + 142570 0.69 0.468051
Target:  5'- gGCg-GCGUCGGCgGGAgCagcggGGGCGGCg -3'
miRNA:   3'- aUGagCGCGGUCGgCCUgG-----CCCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 143488 1.08 0.001013
Target:  5'- cUACUCGCGCCAGCCGGACCGGGCGGCc -3'
miRNA:   3'- -AUGAGCGCGGUCGGCCUGGCCCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 150770 0.69 0.468051
Target:  5'- cUACUCcacCCuGCUGGuGCCGGGUGGCg -3'
miRNA:   3'- -AUGAGcgcGGuCGGCC-UGGCCCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 153241 0.68 0.530113
Target:  5'- gGCgCGCGUCGGCCGGcgacGGCGGUu -3'
miRNA:   3'- aUGaGCGCGGUCGGCCuggcCCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 153844 0.68 0.512039
Target:  5'- cACagCGCGCCAcguccucguguGCCGcGCCGaGCGGCg -3'
miRNA:   3'- aUGa-GCGCGGU-----------CGGCcUGGCcCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 159281 0.67 0.594932
Target:  5'- aACUgGUGCUGGCgGcGCCGGGCGcCa -3'
miRNA:   3'- aUGAgCGCGGUCGgCcUGGCCCGCcG- -5'
1617 3' -64.6 NC_001347.2 + 167217 0.67 0.594932
Target:  5'- gGC-CGCGCCGGCCGcGCCGcGaGaCGGa -3'
miRNA:   3'- aUGaGCGCGGUCGGCcUGGC-C-C-GCCg -5'
1617 3' -64.6 NC_001347.2 + 169129 0.68 0.485423
Target:  5'- cGCgCGCGCCgcgcugcaguGGCUGGACCuGGGCccGCa -3'
miRNA:   3'- aUGaGCGCGG----------UCGGCCUGG-CCCGc-CG- -5'
1617 3' -64.6 NC_001347.2 + 171708 0.68 0.494224
Target:  5'- gUGCU-GCGCgAGuuGGugACCGaGGCGGUg -3'
miRNA:   3'- -AUGAgCGCGgUCggCC--UGGC-CCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 173807 0.66 0.62316
Target:  5'- cUACcUGaCGUCcaaAGgUGGAUCGGGCGGCg -3'
miRNA:   3'- -AUGaGC-GCGG---UCgGCCUGGCCCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 174185 0.69 0.477567
Target:  5'- gGCgcaGCGCCAGCCuuagcuuucuugacuGGCCGGaCGGCa -3'
miRNA:   3'- aUGag-CGCGGUCGGc--------------CUGGCCcGCCG- -5'
1617 3' -64.6 NC_001347.2 + 182181 0.73 0.282911
Target:  5'- aGCgugugUGgGCCGGCCcucggGGugCGGGUGGCg -3'
miRNA:   3'- aUGa----GCgCGGUCGG-----CCugGCCCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 184949 0.7 0.386443
Target:  5'- aGCUCGU--CGGCCGGcgUGGGCGGCu -3'
miRNA:   3'- aUGAGCGcgGUCGGCCugGCCCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 185126 0.73 0.248097
Target:  5'- uUGCggCGCGagCAGCC--GCCGGGCGGCa -3'
miRNA:   3'- -AUGa-GCGCg-GUCGGccUGGCCCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 189863 0.66 0.62316
Target:  5'- aGCgguagCGCGCCGGgucgccuguCCGGcagcaGCCGGGCcGCc -3'
miRNA:   3'- aUGa----GCGCGGUC---------GGCC-----UGGCCCGcCG- -5'
1617 3' -64.6 NC_001347.2 + 193298 0.67 0.576219
Target:  5'- gGCUCGUGCguGUC--GCUGGGCuGGCc -3'
miRNA:   3'- aUGAGCGCGguCGGccUGGCCCG-CCG- -5'
1617 3' -64.6 NC_001347.2 + 194888 0.67 0.585561
Target:  5'- cUGCUgCGCGuaugucagcuCCAcGCCGGuagcaagauccGCCuGGGCGGCu -3'
miRNA:   3'- -AUGA-GCGC----------GGU-CGGCC-----------UGG-CCCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 207149 0.67 0.576219
Target:  5'- -gUUUG-GCgAGcCCGGAuCCGGGCGGUc -3'
miRNA:   3'- auGAGCgCGgUC-GGCCU-GGCCCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 210886 0.69 0.434302
Target:  5'- cGC-CGCGCCAGCUGG-CaCGGaGuUGGCg -3'
miRNA:   3'- aUGaGCGCGGUCGGCCuG-GCC-C-GCCG- -5'
1617 3' -64.6 NC_001347.2 + 228702 0.66 0.612795
Target:  5'- cGCUUGCGCU-GUCGGcccagucgccaccGCCGcGGCGGa -3'
miRNA:   3'- aUGAGCGCGGuCGGCC-------------UGGC-CCGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.