miRNA display CGI


Results 21 - 40 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1617 3' -64.6 NC_001347.2 + 142570 0.69 0.468051
Target:  5'- gGCg-GCGUCGGCgGGAgCagcggGGGCGGCg -3'
miRNA:   3'- aUGagCGCGGUCGgCCUgG-----CCCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 139661 0.67 0.557641
Target:  5'- aGC-CGCGUguGCU-GAUCGaGGCGGCg -3'
miRNA:   3'- aUGaGCGCGguCGGcCUGGC-CCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 138959 0.7 0.378811
Target:  5'- cGCUaGCGCCGGUgGGGCCc-GCGGCu -3'
miRNA:   3'- aUGAgCGCGGUCGgCCUGGccCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 136173 0.66 0.636361
Target:  5'- gAC-CGCaGCaCGGCCGGaacccuGCCgcggacugcgccgggGGGCGGCg -3'
miRNA:   3'- aUGaGCG-CG-GUCGGCC------UGG---------------CCCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 136106 0.67 0.594932
Target:  5'- cGC-CGgGCCucGGCCGGGgaGGGUGGg -3'
miRNA:   3'- aUGaGCgCGG--UCGGCCUggCCCGCCg -5'
1617 3' -64.6 NC_001347.2 + 135802 0.69 0.459485
Target:  5'- cAUUcCGCGgCGGgUGGACCGGGaagcCGGCg -3'
miRNA:   3'- aUGA-GCGCgGUCgGCCUGGCCC----GCCG- -5'
1617 3' -64.6 NC_001347.2 + 135212 0.69 0.476698
Target:  5'- ----gGCGCCGaccCCGG-CUGGGCGGCc -3'
miRNA:   3'- augagCGCGGUc--GGCCuGGCCCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 134344 0.7 0.402008
Target:  5'- gACUCGCcUCGGCCaGGggguACCGaGGCGGUg -3'
miRNA:   3'- aUGAGCGcGGUCGG-CC----UGGC-CCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 126856 0.69 0.459485
Target:  5'- cACUCgGCGaCCAGCCcgcacggcuugGGGCUGGcCGGCu -3'
miRNA:   3'- aUGAG-CGC-GGUCGG-----------CCUGGCCcGCCG- -5'
1617 3' -64.6 NC_001347.2 + 117868 0.68 0.491576
Target:  5'- gAC-CGCGUCAGaCGGggcgaccacgucagACgGGGCGGCg -3'
miRNA:   3'- aUGaGCGCGGUCgGCC--------------UGgCCCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 117821 0.69 0.468051
Target:  5'- cACU-GCGCCAGCCaGGuagaagaagcACCG-GCGGCc -3'
miRNA:   3'- aUGAgCGCGGUCGG-CC----------UGGCcCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 114377 0.67 0.594932
Target:  5'- aACU-GCGCCAggccuucccgggGCUGGACUuuGaGGCGGCc -3'
miRNA:   3'- aUGAgCGCGGU------------CGGCCUGG--C-CCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 113177 0.68 0.512039
Target:  5'- aACgCGCGCCccAGCC--GCCGGcGUGGCg -3'
miRNA:   3'- aUGaGCGCGG--UCGGccUGGCC-CGCCG- -5'
1617 3' -64.6 NC_001347.2 + 112627 0.69 0.442608
Target:  5'- gAgUCGCGCCgacgguaauaGGCCGGugAUgGuGGCGGCg -3'
miRNA:   3'- aUgAGCGCGG----------UCGGCC--UGgC-CCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 100885 0.66 0.62316
Target:  5'- gGCgcaGCGCCGGCCauucuCCGGGUcGCg -3'
miRNA:   3'- aUGag-CGCGGUCGGccu--GGCCCGcCG- -5'
1617 3' -64.6 NC_001347.2 + 93208 0.67 0.579952
Target:  5'- cGCUCGCGCUGGCgacgagcucgcugagCGG-CaGcGGCGGCa -3'
miRNA:   3'- aUGAGCGCGGUCG---------------GCCuGgC-CCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 85492 0.76 0.180588
Target:  5'- gUACUCGCG-CAG-CGGuuCGGGCGGCu -3'
miRNA:   3'- -AUGAGCGCgGUCgGCCugGCCCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 85056 0.66 0.65144
Target:  5'- -cCUCGCGCUcgcggaagauGGCCGaGACCaGGUagacgguaGGCa -3'
miRNA:   3'- auGAGCGCGG----------UCGGC-CUGGcCCG--------CCG- -5'
1617 3' -64.6 NC_001347.2 + 81591 0.66 0.622218
Target:  5'- --aUCGcCGCCGGCCGGucgcucgcgaaaaGCCGuGGCauugagacgcacGGCg -3'
miRNA:   3'- augAGC-GCGGUCGGCC-------------UGGC-CCG------------CCG- -5'
1617 3' -64.6 NC_001347.2 + 81022 0.66 0.65144
Target:  5'- cGCUCGuCGCCccagaccaacAGCac-GCCGGGCGcGCu -3'
miRNA:   3'- aUGAGC-GCGG----------UCGgccUGGCCCGC-CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.