miRNA display CGI


Results 41 - 60 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1617 3' -64.6 NC_001347.2 + 78420 0.68 0.521045
Target:  5'- cUGC-CGcCGCCAcCCGG-CCcGGCGGCg -3'
miRNA:   3'- -AUGaGC-GCGGUcGGCCuGGcCCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 77616 0.7 0.417965
Target:  5'- --gUUGCGCCAGagcgugcaaaCGGgcguGCUGGGCGGCc -3'
miRNA:   3'- augAGCGCGGUCg---------GCC----UGGCCCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 76617 0.68 0.485423
Target:  5'- cGCagGCGgCGGCUGcGGCCGcGGCGGa -3'
miRNA:   3'- aUGagCGCgGUCGGC-CUGGC-CCGCCg -5'
1617 3' -64.6 NC_001347.2 + 75397 0.66 0.632589
Target:  5'- cGCUCcaaGCGggAGCgGcGGCCGuGGCGGCg -3'
miRNA:   3'- aUGAG---CGCggUCGgC-CUGGC-CCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 63256 0.67 0.557641
Target:  5'- cGCU-GCGCCcGCCGuGGCCaccaacGGCGGUa -3'
miRNA:   3'- aUGAgCGCGGuCGGC-CUGGc-----CCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 39788 0.7 0.402008
Target:  5'- cACUggaGCGCaCAGCCGccucCCGGGCGcGCa -3'
miRNA:   3'- aUGAg--CGCG-GUCGGCcu--GGCCCGC-CG- -5'
1617 3' -64.6 NC_001347.2 + 38677 0.66 0.65144
Target:  5'- --gUCGUGCCGGCCcaccGCCGGcGCaGCu -3'
miRNA:   3'- augAGCGCGGUCGGcc--UGGCC-CGcCG- -5'
1617 3' -64.6 NC_001347.2 + 38305 0.67 0.585561
Target:  5'- --aUCGCGCCcccGCCGGcggcGCCGuaCGGCu -3'
miRNA:   3'- augAGCGCGGu--CGGCC----UGGCccGCCG- -5'
1617 3' -64.6 NC_001347.2 + 37983 0.71 0.371281
Target:  5'- cUGCUCGCGguCCAGCuCGGgcagcagccGCCGcGCGGCc -3'
miRNA:   3'- -AUGAGCGC--GGUCG-GCC---------UGGCcCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 31668 0.7 0.417965
Target:  5'- gGCUCGgGUCGGCUGG-UCGGGCcgucGCg -3'
miRNA:   3'- aUGAGCgCGGUCGGCCuGGCCCGc---CG- -5'
1617 3' -64.6 NC_001347.2 + 30600 0.68 0.512039
Target:  5'- gGCUuccUGCgGCCGGCCgcGGugCcGGCGGCu -3'
miRNA:   3'- aUGA---GCG-CGGUCGG--CCugGcCCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 21615 0.66 0.62316
Target:  5'- uUGCUgaUGUGCCAGCCGucgccgcaGGCCuuugucGGcGCGGCu -3'
miRNA:   3'- -AUGA--GCGCGGUCGGC--------CUGG------CC-CGCCG- -5'
1617 3' -64.6 NC_001347.2 + 18461 0.67 0.545657
Target:  5'- gGCcugCGCGCCuGCCGGccuuuugaccacauGCCGGccGCGGa -3'
miRNA:   3'- aUGa--GCGCGGuCGGCC--------------UGGCC--CGCCg -5'
1617 3' -64.6 NC_001347.2 + 16712 0.66 0.642018
Target:  5'- cGCUCGcCGCCccugcagcgucuAGCCGGugaaaucuACCGGcUGGCc -3'
miRNA:   3'- aUGAGC-GCGG------------UCGGCC--------UGGCCcGCCG- -5'
1617 3' -64.6 NC_001347.2 + 13499 0.71 0.34931
Target:  5'- cACg-GCGCaacGCCGGgugcucacccGCCGGGCGGCc -3'
miRNA:   3'- aUGagCGCGgu-CGGCC----------UGGCCCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 8158 0.74 0.242652
Target:  5'- aGCUCGUucuccaagucauGCCGGUgGGGCCGGGaCGGg -3'
miRNA:   3'- aUGAGCG------------CGGUCGgCCUGGCCC-GCCg -5'
1617 3' -64.6 NC_001347.2 + 2387 0.68 0.494224
Target:  5'- gAgUCgGCGCCcgccGCCGaGGCCGcgcGGCGGCu -3'
miRNA:   3'- aUgAG-CGCGGu---CGGC-CUGGC---CCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 2145 0.66 0.65144
Target:  5'- cGCaCGCGgUGGUCGGGgCGGacGCGGCa -3'
miRNA:   3'- aUGaGCGCgGUCGGCCUgGCC--CGCCG- -5'
1617 3' -64.6 NC_001347.2 + 1932 0.7 0.409939
Target:  5'- cUGCcCGCGCgguGGCUGGGCUGcGCGGCg -3'
miRNA:   3'- -AUGaGCGCGg--UCGGCCUGGCcCGCCG- -5'
1617 3' -64.6 NC_001347.2 + 1726 0.71 0.370534
Target:  5'- aGCU-GCGCCGGCggUGGGCCGgcacgacGGUGGCg -3'
miRNA:   3'- aUGAgCGCGGUCG--GCCUGGC-------CCGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.