Results 21 - 40 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1617 | 3' | -64.6 | NC_001347.2 | + | 194888 | 0.67 | 0.585561 |
Target: 5'- cUGCUgCGCGuaugucagcuCCAcGCCGGuagcaagauccGCCuGGGCGGCu -3' miRNA: 3'- -AUGA-GCGC----------GGU-CGGCC-----------UGG-CCCGCCG- -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 93208 | 0.67 | 0.579952 |
Target: 5'- cGCUCGCGCUGGCgacgagcucgcugagCGG-CaGcGGCGGCa -3' miRNA: 3'- aUGAGCGCGGUCG---------------GCCuGgC-CCGCCG- -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 16712 | 0.66 | 0.642018 |
Target: 5'- cGCUCGcCGCCccugcagcgucuAGCCGGugaaaucuACCGGcUGGCc -3' miRNA: 3'- aUGAGC-GCGG------------UCGGCC--------UGGCCcGCCG- -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 75397 | 0.66 | 0.632589 |
Target: 5'- cGCUCcaaGCGggAGCgGcGGCCGuGGCGGCg -3' miRNA: 3'- aUGAG---CGCggUCGgC-CUGGC-CCGCCG- -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 136173 | 0.66 | 0.636361 |
Target: 5'- gAC-CGCaGCaCGGCCGGaacccuGCCgcggacugcgccgggGGGCGGCg -3' miRNA: 3'- aUGaGCG-CG-GUCGGCC------UGG---------------CCCGCCG- -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 142 | 0.66 | 0.642018 |
Target: 5'- cGCggGCGUguGCCGGgugugucguGCCGGGUgugucgcgGGCg -3' miRNA: 3'- aUGagCGCGguCGGCC---------UGGCCCG--------CCG- -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 229621 | 0.66 | 0.642018 |
Target: 5'- cGCggGCGUguGCCGGgugugucguGCCGGGUgugucgcgGGCg -3' miRNA: 3'- aUGagCGCGguCGGCC---------UGGCCCG--------CCG- -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 81022 | 0.66 | 0.65144 |
Target: 5'- cGCUCGuCGCCccagaccaacAGCac-GCCGGGCGcGCu -3' miRNA: 3'- aUGAGC-GCGG----------UCGgccUGGCCCGC-CG- -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 38677 | 0.66 | 0.65144 |
Target: 5'- --gUCGUGCCGGCCcaccGCCGGcGCaGCu -3' miRNA: 3'- augAGCGCGGUCGGcc--UGGCC-CGcCG- -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 85056 | 0.66 | 0.65144 |
Target: 5'- -cCUCGCGCUcgcggaagauGGCCGaGACCaGGUagacgguaGGCa -3' miRNA: 3'- auGAGCGCGG----------UCGGC-CUGGcCCG--------CCG- -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 173807 | 0.66 | 0.62316 |
Target: 5'- cUACcUGaCGUCcaaAGgUGGAUCGGGCGGCg -3' miRNA: 3'- -AUGaGC-GCGG---UCgGCCUGGCCCGCCG- -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 189863 | 0.66 | 0.62316 |
Target: 5'- aGCgguagCGCGCCGGgucgccuguCCGGcagcaGCCGGGCcGCc -3' miRNA: 3'- aUGa----GCGCGGUC---------GGCC-----UGGCCCGcCG- -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 114377 | 0.67 | 0.594932 |
Target: 5'- aACU-GCGCCAggccuucccgggGCUGGACUuuGaGGCGGCc -3' miRNA: 3'- aUGAgCGCGGU------------CGGCCUGG--C-CCGCCG- -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 167217 | 0.67 | 0.594932 |
Target: 5'- gGC-CGCGCCGGCCGcGCCGcGaGaCGGa -3' miRNA: 3'- aUGaGCGCGGUCGGCcUGGC-C-C-GCCg -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 136106 | 0.67 | 0.594932 |
Target: 5'- cGC-CGgGCCucGGCCGGGgaGGGUGGg -3' miRNA: 3'- aUGaGCgCGG--UCGGCCUggCCCGCCg -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 159281 | 0.67 | 0.594932 |
Target: 5'- aACUgGUGCUGGCgGcGCCGGGCGcCa -3' miRNA: 3'- aUGAgCGCGGUCGgCcUGGCCCGCcG- -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 228702 | 0.66 | 0.612795 |
Target: 5'- cGCUUGCGCU-GUCGGcccagucgccaccGCCGcGGCGGa -3' miRNA: 3'- aUGAGCGCGGuCGGCC-------------UGGC-CCGCCg -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 100885 | 0.66 | 0.62316 |
Target: 5'- gGCgcaGCGCCGGCCauucuCCGGGUcGCg -3' miRNA: 3'- aUGag-CGCGGUCGGccu--GGCCCGcCG- -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 21615 | 0.66 | 0.62316 |
Target: 5'- uUGCUgaUGUGCCAGCCGucgccgcaGGCCuuugucGGcGCGGCu -3' miRNA: 3'- -AUGA--GCGCGGUCGGC--------CUGG------CC-CGCCG- -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 81591 | 0.66 | 0.622218 |
Target: 5'- --aUCGcCGCCGGCCGGucgcucgcgaaaaGCCGuGGCauugagacgcacGGCg -3' miRNA: 3'- augAGC-GCGGUCGGCC-------------UGGC-CCG------------CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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