Results 41 - 60 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1617 | 3' | -64.6 | NC_001347.2 | + | 142 | 0.66 | 0.642018 |
Target: 5'- cGCggGCGUguGCCGGgugugucguGCCGGGUgugucgcgGGCg -3' miRNA: 3'- aUGagCGCGguCGGCC---------UGGCCCG--------CCG- -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 229621 | 0.66 | 0.642018 |
Target: 5'- cGCggGCGUguGCCGGgugugucguGCCGGGUgugucgcgGGCg -3' miRNA: 3'- aUGagCGCGguCGGCC---------UGGCCCG--------CCG- -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 81022 | 0.66 | 0.65144 |
Target: 5'- cGCUCGuCGCCccagaccaacAGCac-GCCGGGCGcGCu -3' miRNA: 3'- aUGAGC-GCGG----------UCGgccUGGCCCGC-CG- -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 38677 | 0.66 | 0.65144 |
Target: 5'- --gUCGUGCCGGCCcaccGCCGGcGCaGCu -3' miRNA: 3'- augAGCGCGGUCGGcc--UGGCC-CGcCG- -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 85056 | 0.66 | 0.65144 |
Target: 5'- -cCUCGCGCUcgcggaagauGGCCGaGACCaGGUagacgguaGGCa -3' miRNA: 3'- auGAGCGCGG----------UCGGC-CUGGcCCG--------CCG- -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 228702 | 0.66 | 0.612795 |
Target: 5'- cGCUUGCGCU-GUCGGcccagucgccaccGCCGcGGCGGa -3' miRNA: 3'- aUGAGCGCGGuCGGCC-------------UGGC-CCGCCg -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 159281 | 0.67 | 0.594932 |
Target: 5'- aACUgGUGCUGGCgGcGCCGGGCGcCa -3' miRNA: 3'- aUGAgCGCGGUCGgCcUGGCCCGCcG- -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 78420 | 0.68 | 0.521045 |
Target: 5'- cUGC-CGcCGCCAcCCGG-CCcGGCGGCg -3' miRNA: 3'- -AUGaGC-GCGGUcGGCCuGGcCCGCCG- -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 18461 | 0.67 | 0.545657 |
Target: 5'- gGCcugCGCGCCuGCCGGccuuuugaccacauGCCGGccGCGGa -3' miRNA: 3'- aUGa--GCGCGGuCGGCC--------------UGGCC--CGCCg -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 153241 | 0.68 | 0.530113 |
Target: 5'- gGCgCGCGUCGGCCGGcgacGGCGGUu -3' miRNA: 3'- aUGaGCGCGGUCGGCCuggcCCGCCG- -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 63256 | 0.67 | 0.557641 |
Target: 5'- cGCU-GCGCCcGCCGuGGCCaccaacGGCGGUa -3' miRNA: 3'- aUGAgCGCGGuCGGC-CUGGc-----CCGCCG- -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 193298 | 0.67 | 0.576219 |
Target: 5'- gGCUCGUGCguGUC--GCUGGGCuGGCc -3' miRNA: 3'- aUGAGCGCGguCGGccUGGCCCG-CCG- -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 139661 | 0.67 | 0.557641 |
Target: 5'- aGC-CGCGUguGCU-GAUCGaGGCGGCg -3' miRNA: 3'- aUGaGCGCGguCGGcCUGGC-CCGCCG- -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 207149 | 0.67 | 0.576219 |
Target: 5'- -gUUUG-GCgAGcCCGGAuCCGGGCGGUc -3' miRNA: 3'- auGAGCgCGgUC-GGCCU-GGCCCGCCG- -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 38305 | 0.67 | 0.585561 |
Target: 5'- --aUCGCGCCcccGCCGGcggcGCCGuaCGGCu -3' miRNA: 3'- augAGCGCGGu--CGGCC----UGGCccGCCG- -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 194888 | 0.67 | 0.585561 |
Target: 5'- cUGCUgCGCGuaugucagcuCCAcGCCGGuagcaagauccGCCuGGGCGGCu -3' miRNA: 3'- -AUGA-GCGC----------GGU-CGGCC-----------UGG-CCCGCCG- -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 93208 | 0.67 | 0.579952 |
Target: 5'- cGCUCGCGCUGGCgacgagcucgcugagCGG-CaGcGGCGGCa -3' miRNA: 3'- aUGAGCGCGGUCG---------------GCCuGgC-CCGCCG- -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 114377 | 0.67 | 0.594932 |
Target: 5'- aACU-GCGCCAggccuucccgggGCUGGACUuuGaGGCGGCc -3' miRNA: 3'- aUGAgCGCGGU------------CGGCCUGG--C-CCGCCG- -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 167217 | 0.67 | 0.594932 |
Target: 5'- gGC-CGCGCCGGCCGcGCCGcGaGaCGGa -3' miRNA: 3'- aUGaGCGCGGUCGGCcUGGC-C-C-GCCg -5' |
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1617 | 3' | -64.6 | NC_001347.2 | + | 136106 | 0.67 | 0.594932 |
Target: 5'- cGC-CGgGCCucGGCCGGGgaGGGUGGg -3' miRNA: 3'- aUGaGCgCGG--UCGGCCUggCCCGCCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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