miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1617 5' -53 NC_001347.2 + 127197 0.66 0.989823
Target:  5'- -cGCCGUggCCUCCGaaaccUGGcAUCGCaGCc -3'
miRNA:   3'- caUGGCA--GGAGGCaa---ACC-UAGCGaCG- -5'
1617 5' -53 NC_001347.2 + 210145 0.66 0.988474
Target:  5'- -cGCCGUCUUUCGUgcc-GUCGCcGCa -3'
miRNA:   3'- caUGGCAGGAGGCAaaccUAGCGaCG- -5'
1617 5' -53 NC_001347.2 + 212115 0.67 0.986989
Target:  5'- gGUGaCGUUCUUCGcgUGGAUCuuuuguGCUGCg -3'
miRNA:   3'- -CAUgGCAGGAGGCaaACCUAG------CGACG- -5'
1617 5' -53 NC_001347.2 + 67390 0.67 0.983584
Target:  5'- -cACCGUCUcgcCCGcgcugUGGG-CGCUGCu -3'
miRNA:   3'- caUGGCAGGa--GGCaa---ACCUaGCGACG- -5'
1617 5' -53 NC_001347.2 + 63240 0.67 0.981647
Target:  5'- -cGCCGgCCUCCGc--GGc-CGCUGCg -3'
miRNA:   3'- caUGGCaGGAGGCaaaCCuaGCGACG- -5'
1617 5' -53 NC_001347.2 + 47777 0.67 0.979543
Target:  5'- -cGCCGUgCCUCCGgUUGG-UgGCcgGCg -3'
miRNA:   3'- caUGGCA-GGAGGCaAACCuAgCGa-CG- -5'
1617 5' -53 NC_001347.2 + 23486 0.68 0.977266
Target:  5'- gGUGCCcaCCaUCUGUUUGGcccUGCUGCa -3'
miRNA:   3'- -CAUGGcaGG-AGGCAAACCua-GCGACG- -5'
1617 5' -53 NC_001347.2 + 142239 0.68 0.977266
Target:  5'- uGUGCUcUUCUUCGU--GGAUgGCUGCg -3'
miRNA:   3'- -CAUGGcAGGAGGCAaaCCUAgCGACG- -5'
1617 5' -53 NC_001347.2 + 14544 0.68 0.974807
Target:  5'- -aGCCGUUgacgCCGUUgGGAUaCGCUGUu -3'
miRNA:   3'- caUGGCAGga--GGCAAaCCUA-GCGACG- -5'
1617 5' -53 NC_001347.2 + 5804 0.68 0.972159
Target:  5'- -gGCgGcCCUCCGUUcggcucgggucgUGGGUCGUcGCu -3'
miRNA:   3'- caUGgCaGGAGGCAA------------ACCUAGCGaCG- -5'
1617 5' -53 NC_001347.2 + 88221 0.69 0.963024
Target:  5'- -cGCCGcUCacgcugUCCGag-GGGUCGCUGCc -3'
miRNA:   3'- caUGGC-AGg-----AGGCaaaCCUAGCGACG- -5'
1617 5' -53 NC_001347.2 + 116696 0.7 0.93411
Target:  5'- -cGCUGUCCUCgcgaCGUgagGGAUcccagcCGCUGCg -3'
miRNA:   3'- caUGGCAGGAG----GCAaa-CCUA------GCGACG- -5'
1617 5' -53 NC_001347.2 + 25713 0.7 0.93411
Target:  5'- cGUACCGUCCgCCGUcagaucgUGG-UCGUccaUGCu -3'
miRNA:   3'- -CAUGGCAGGaGGCAa------ACCuAGCG---ACG- -5'
1617 5' -53 NC_001347.2 + 166626 0.73 0.817978
Target:  5'- -cGCCGUCCUCCGagaGGcgCGCccgGCc -3'
miRNA:   3'- caUGGCAGGAGGCaaaCCuaGCGa--CG- -5'
1617 5' -53 NC_001347.2 + 143522 1.13 0.004975
Target:  5'- cGUACCGUCCUCCGUUUGGAUCGCUGCg -3'
miRNA:   3'- -CAUGGCAGGAGGCAAACCUAGCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.