miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16171 3' -54.8 NC_004065.1 + 56617 0.66 0.973564
Target:  5'- aGGCGGCcgcGGA--UGUGGaUGCGGUGGc -3'
miRNA:   3'- -UUGCCGu--UCUucACAUCgACGCCGCC- -5'
16171 3' -54.8 NC_004065.1 + 97940 0.66 0.973564
Target:  5'- -cCGGCAcc-GGcGUGGCaGCGGUGGg -3'
miRNA:   3'- uuGCCGUucuUCaCAUCGaCGCCGCC- -5'
16171 3' -54.8 NC_004065.1 + 67381 0.66 0.97276
Target:  5'- uGACGGUcggcgugcacacgaGAGggGUgaucGUGGC-GCGGgGGg -3'
miRNA:   3'- -UUGCCG--------------UUCuuCA----CAUCGaCGCCgCC- -5'
16171 3' -54.8 NC_004065.1 + 223891 0.66 0.970818
Target:  5'- uGACGaGUAGGAGc--UGGCgGCGGCGGc -3'
miRNA:   3'- -UUGC-CGUUCUUcacAUCGaCGCCGCC- -5'
16171 3' -54.8 NC_004065.1 + 200576 0.66 0.970818
Target:  5'- cACGGguGGAgaAGgGUGGUcGCGGCGu -3'
miRNA:   3'- uUGCCguUCU--UCaCAUCGaCGCCGCc -5'
16171 3' -54.8 NC_004065.1 + 66607 0.66 0.970818
Target:  5'- cGCGGaCAGGAuccGGagccgcgGGCUGCGGCGc -3'
miRNA:   3'- uUGCC-GUUCU---UCaca----UCGACGCCGCc -5'
16171 3' -54.8 NC_004065.1 + 142773 0.66 0.967873
Target:  5'- cGACGGCcugcuGGuGGUGgcGCcgGgGGCGGc -3'
miRNA:   3'- -UUGCCGu----UCuUCACauCGa-CgCCGCC- -5'
16171 3' -54.8 NC_004065.1 + 124464 0.66 0.967873
Target:  5'- cGACGGCGcGccGUGccGCUGCGcCGGg -3'
miRNA:   3'- -UUGCCGUuCuuCACauCGACGCcGCC- -5'
16171 3' -54.8 NC_004065.1 + 90954 0.66 0.967873
Target:  5'- cGACGGCGGuGAgcuucuggcuGGUGUAGCcGUGGUa- -3'
miRNA:   3'- -UUGCCGUU-CU----------UCACAUCGaCGCCGcc -5'
16171 3' -54.8 NC_004065.1 + 203022 0.66 0.964724
Target:  5'- uGGCGGCGuGGAGGcUGUuguugcuGCUGCuGGCGu -3'
miRNA:   3'- -UUGCCGU-UCUUC-ACAu------CGACG-CCGCc -5'
16171 3' -54.8 NC_004065.1 + 138151 0.66 0.964724
Target:  5'- cAGCGGCcGGcGGUGUuuacGCUGgUGGCGa -3'
miRNA:   3'- -UUGCCGuUCuUCACAu---CGAC-GCCGCc -5'
16171 3' -54.8 NC_004065.1 + 52482 0.66 0.964724
Target:  5'- -uUGGCGGuGggGUGUugggcgcuguuGGCgcgcgGUGGCGGu -3'
miRNA:   3'- uuGCCGUU-CuuCACA-----------UCGa----CGCCGCC- -5'
16171 3' -54.8 NC_004065.1 + 68891 0.66 0.964724
Target:  5'- aGACGGCc-GAGGUGaAGCUGgaGGUGa -3'
miRNA:   3'- -UUGCCGuuCUUCACaUCGACg-CCGCc -5'
16171 3' -54.8 NC_004065.1 + 135775 0.66 0.964724
Target:  5'- gAACGGCAccGGAGGg--GGCUGCauuauuaaGGCGc -3'
miRNA:   3'- -UUGCCGU--UCUUCacaUCGACG--------CCGCc -5'
16171 3' -54.8 NC_004065.1 + 29962 0.66 0.964724
Target:  5'- -uCGGgGAccGGUGcUGGCgGCGGCGGc -3'
miRNA:   3'- uuGCCgUUcuUCAC-AUCGaCGCCGCC- -5'
16171 3' -54.8 NC_004065.1 + 168570 0.66 0.962734
Target:  5'- nGCGGCGacAGcgggcgucucggcccGAGUGcUAGCUGCGGaGGc -3'
miRNA:   3'- uUGCCGU--UC---------------UUCAC-AUCGACGCCgCC- -5'
16171 3' -54.8 NC_004065.1 + 184791 0.66 0.958157
Target:  5'- cGACgGGCgGAGGAGgacggugacgcaacgGUGGCgGUGGCGGc -3'
miRNA:   3'- -UUG-CCG-UUCUUCa--------------CAUCGaCGCCGCC- -5'
16171 3' -54.8 NC_004065.1 + 59155 0.66 0.957789
Target:  5'- cGACGGCGAGAGuccgaucgGGCgcGCGGCGa -3'
miRNA:   3'- -UUGCCGUUCUUcaca----UCGa-CGCCGCc -5'
16171 3' -54.8 NC_004065.1 + 139573 0.66 0.957789
Target:  5'- uGCGcGCAgagcacucGGGAG-GUGGCcGCGGCGa -3'
miRNA:   3'- uUGC-CGU--------UCUUCaCAUCGaCGCCGCc -5'
16171 3' -54.8 NC_004065.1 + 59740 0.66 0.957789
Target:  5'- cGGCGGCGAuGGugccgaccgcguGGccgaugGUGGCgGCGGCGGc -3'
miRNA:   3'- -UUGCCGUU-CU------------UCa-----CAUCGaCGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.