miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16171 5' -64.5 NC_004065.1 + 90163 0.66 0.669775
Target:  5'- uGCCGCCGGcuccGcCGCCUcCGCcGUCGc -3'
miRNA:   3'- gCGGCGGCCuc--C-GCGGAaGCGaCGGC- -5'
16171 5' -64.5 NC_004065.1 + 49679 0.66 0.669775
Target:  5'- uGCCGCCGGAgcaGGCGuCCcUC-CUGaugaCGg -3'
miRNA:   3'- gCGGCGGCCU---CCGC-GGaAGcGACg---GC- -5'
16171 5' -64.5 NC_004065.1 + 34936 0.66 0.669775
Target:  5'- aCGCCcCUGGGGGUcugcGCCgcgCGCUcGCCc -3'
miRNA:   3'- -GCGGcGGCCUCCG----CGGaa-GCGA-CGGc -5'
16171 5' -64.5 NC_004065.1 + 159678 0.66 0.669775
Target:  5'- aGCUaCCcGAGGCGCUccUCGCcGCCGu -3'
miRNA:   3'- gCGGcGGcCUCCGCGGa-AGCGaCGGC- -5'
16171 5' -64.5 NC_004065.1 + 198018 0.66 0.669775
Target:  5'- gGCC-UCGGAGGCGg--UCGCggucGCCGg -3'
miRNA:   3'- gCGGcGGCCUCCGCggaAGCGa---CGGC- -5'
16171 5' -64.5 NC_004065.1 + 91196 0.66 0.669775
Target:  5'- gCGCCGUCGGcGuGCGCggcaucggCGCcGCCGg -3'
miRNA:   3'- -GCGGCGGCCuC-CGCGgaa-----GCGaCGGC- -5'
16171 5' -64.5 NC_004065.1 + 119190 0.66 0.669775
Target:  5'- gGCCGUgagcgagucUGGAGGCgugccguugGCCUUCGCguaCCGc -3'
miRNA:   3'- gCGGCG---------GCCUCCG---------CGGAAGCGac-GGC- -5'
16171 5' -64.5 NC_004065.1 + 99985 0.66 0.669775
Target:  5'- gGCCGCgGGucGuCGUCUUCGUcguaGCCGc -3'
miRNA:   3'- gCGGCGgCCucC-GCGGAAGCGa---CGGC- -5'
16171 5' -64.5 NC_004065.1 + 151359 0.66 0.669775
Target:  5'- gGgCGCCGc-GGCGCCggcCGCUGCg- -3'
miRNA:   3'- gCgGCGGCcuCCGCGGaa-GCGACGgc -5'
16171 5' -64.5 NC_004065.1 + 173371 0.66 0.669775
Target:  5'- aCGUCGaaccgaCGGugaaGGGUGCCgcggcCGCUGCCa -3'
miRNA:   3'- -GCGGCg-----GCC----UCCGCGGaa---GCGACGGc -5'
16171 5' -64.5 NC_004065.1 + 36291 0.66 0.66697
Target:  5'- aGCCGa-GGcgauGGCGCCUUCGacgcugaucgcacuCUGCCu -3'
miRNA:   3'- gCGGCggCCu---CCGCGGAAGC--------------GACGGc -5'
16171 5' -64.5 NC_004065.1 + 165492 0.66 0.660416
Target:  5'- uGUCGCCGuc-GCGCCgcaGCUGCUGc -3'
miRNA:   3'- gCGGCGGCcucCGCGGaagCGACGGC- -5'
16171 5' -64.5 NC_004065.1 + 166151 0.66 0.660416
Target:  5'- gCGCCGgCGGcagcGGCGCCgacgUCGUgcaCCGc -3'
miRNA:   3'- -GCGGCgGCCu---CCGCGGa---AGCGac-GGC- -5'
16171 5' -64.5 NC_004065.1 + 224275 0.66 0.660416
Target:  5'- aGCUG-CGGAGcaGCGCUagcgCGUUGCCGa -3'
miRNA:   3'- gCGGCgGCCUC--CGCGGaa--GCGACGGC- -5'
16171 5' -64.5 NC_004065.1 + 200332 0.66 0.660416
Target:  5'- aGcCCGUCGG-GGCGCCgaggcUCaGCaaccUGCCGg -3'
miRNA:   3'- gC-GGCGGCCuCCGCGGa----AG-CG----ACGGC- -5'
16171 5' -64.5 NC_004065.1 + 28955 0.66 0.660416
Target:  5'- cCGUCGCCGGAGGCGggg-CGCUa-CGa -3'
miRNA:   3'- -GCGGCGGCCUCCGCggaaGCGAcgGC- -5'
16171 5' -64.5 NC_004065.1 + 225657 0.66 0.651038
Target:  5'- cCGCCGCCGccGucGCGCUccacgCGCaGCCGu -3'
miRNA:   3'- -GCGGCGGC--CucCGCGGaa---GCGaCGGC- -5'
16171 5' -64.5 NC_004065.1 + 199544 0.66 0.651038
Target:  5'- gCGCCuccaGCCGGGcGCGCCccaUCG-UGCCGc -3'
miRNA:   3'- -GCGG----CGGCCUcCGCGGa--AGCgACGGC- -5'
16171 5' -64.5 NC_004065.1 + 179739 0.66 0.651038
Target:  5'- uCGCCGCgCGGAcGGCGgUcUCGggGCCc -3'
miRNA:   3'- -GCGGCG-GCCU-CCGCgGaAGCgaCGGc -5'
16171 5' -64.5 NC_004065.1 + 64887 0.66 0.6501
Target:  5'- gCGCgCGUCGGAgaagagcGGCGCCagUCGCcggGCgGg -3'
miRNA:   3'- -GCG-GCGGCCU-------CCGCGGa-AGCGa--CGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.