miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16173 5' -55.8 NC_004065.1 + 127210 0.66 0.957022
Target:  5'- cGUG-GUUcGg--GAGcgGCGGCCGCGAg -3'
miRNA:   3'- -CACgCGA-CacaCUUuaCGCCGGCGCU- -5'
16173 5' -55.8 NC_004065.1 + 176720 0.66 0.957022
Target:  5'- gGUGCuGCUGUGUGggGccUGGuUCGCGu -3'
miRNA:   3'- -CACG-CGACACACuuUacGCC-GGCGCu -5'
16173 5' -55.8 NC_004065.1 + 4400 0.66 0.953213
Target:  5'- -aGUGCUGUucgGAGcgGUGGCCacgGCGGg -3'
miRNA:   3'- caCGCGACAca-CUUuaCGCCGG---CGCU- -5'
16173 5' -55.8 NC_004065.1 + 77639 0.66 0.949182
Target:  5'- -gGCGCUGUcccugaugaagGUGA--UGCGGCagGUGAg -3'
miRNA:   3'- caCGCGACA-----------CACUuuACGCCGg-CGCU- -5'
16173 5' -55.8 NC_004065.1 + 184911 0.66 0.949182
Target:  5'- -gGCGCccggGUGgcucGGGA-GCGGCCGgGAg -3'
miRNA:   3'- caCGCGa---CACa---CUUUaCGCCGGCgCU- -5'
16173 5' -55.8 NC_004065.1 + 164549 0.66 0.949182
Target:  5'- --uCGCUGUGUcGAGccgGCGGCgGCGc -3'
miRNA:   3'- cacGCGACACA-CUUua-CGCCGgCGCu -5'
16173 5' -55.8 NC_004065.1 + 65316 0.66 0.944927
Target:  5'- -cGCGUg--GUGGGAccgGCGGCgGCGGc -3'
miRNA:   3'- caCGCGacaCACUUUa--CGCCGgCGCU- -5'
16173 5' -55.8 NC_004065.1 + 32296 0.66 0.944048
Target:  5'- -gGCGaucgccaagGUGAAGcucacgGCGGCCGCGAc -3'
miRNA:   3'- caCGCgaca-----CACUUUa-----CGCCGGCGCU- -5'
16173 5' -55.8 NC_004065.1 + 144404 0.66 0.940444
Target:  5'- uUGC-CUGUacaaGUGAGGUaaucGCGGCgGCGAg -3'
miRNA:   3'- cACGcGACA----CACUUUA----CGCCGgCGCU- -5'
16173 5' -55.8 NC_004065.1 + 101173 0.66 0.940444
Target:  5'- -cGCGCaUGUugauguacGUGAAcagguUGCGGCCGgGGu -3'
miRNA:   3'- caCGCG-ACA--------CACUUu----ACGCCGGCgCU- -5'
16173 5' -55.8 NC_004065.1 + 62377 0.66 0.940444
Target:  5'- -gGCgGCggggGUGguggcggcgGggGUgGCGGCCGCGGa -3'
miRNA:   3'- caCG-CGa---CACa--------CuuUA-CGCCGGCGCU- -5'
16173 5' -55.8 NC_004065.1 + 125463 0.67 0.935733
Target:  5'- aUGCGCgGcGUGcacaGCGGCCGCa- -3'
miRNA:   3'- cACGCGaCaCACuuuaCGCCGGCGcu -5'
16173 5' -55.8 NC_004065.1 + 197563 0.67 0.935733
Target:  5'- -cGCGCcgacgaccUG-GUGGGcAUGCGGCUGCGc -3'
miRNA:   3'- caCGCG--------ACaCACUU-UACGCCGGCGCu -5'
16173 5' -55.8 NC_004065.1 + 194076 0.67 0.930792
Target:  5'- -gGCGCgaGUccGAcgaccUGCGGCCGCGAc -3'
miRNA:   3'- caCGCGa-CAcaCUuu---ACGCCGGCGCU- -5'
16173 5' -55.8 NC_004065.1 + 191836 0.67 0.92562
Target:  5'- -aGUGCcGUcGUGG--UGaCGGCCGCGAc -3'
miRNA:   3'- caCGCGaCA-CACUuuAC-GCCGGCGCU- -5'
16173 5' -55.8 NC_004065.1 + 186884 0.68 0.902626
Target:  5'- cGUGCGC-GUGUcuuccGCGGCCgGCGGu -3'
miRNA:   3'- -CACGCGaCACAcuuuaCGCCGG-CGCU- -5'
16173 5' -55.8 NC_004065.1 + 225057 0.68 0.883008
Target:  5'- -aGCGCacGUcGUGAug-GCGGCCGCu- -3'
miRNA:   3'- caCGCGa-CA-CACUuuaCGCCGGCGcu -5'
16173 5' -55.8 NC_004065.1 + 114312 0.68 0.874613
Target:  5'- aUGCGCUGaUGUccauccugGCGGCCGCc- -3'
miRNA:   3'- cACGCGAC-ACAcuuua---CGCCGGCGcu -5'
16173 5' -55.8 NC_004065.1 + 141652 0.68 0.868848
Target:  5'- -gGCGgUGgcgGUGcc--GCGGCCGCGGa -3'
miRNA:   3'- caCGCgACa--CACuuuaCGCCGGCGCU- -5'
16173 5' -55.8 NC_004065.1 + 96399 0.7 0.804477
Target:  5'- aGUGCuGCUGUGUuuugcgcucgcGAGcgGCGGCacgGCGGa -3'
miRNA:   3'- -CACG-CGACACA-----------CUUuaCGCCGg--CGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.