miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16174 3' -55.4 NC_004065.1 + 101475 0.66 0.955413
Target:  5'- cUGCGGGc-GcAGAcaCAGCCACACCAc -3'
miRNA:   3'- -ACGUCCucCaUCUa-GUCGGUGUGGUa -5'
16174 3' -55.4 NC_004065.1 + 191309 0.66 0.951447
Target:  5'- aGCAGGAuGGUGc--CGGCCGCGCg-- -3'
miRNA:   3'- aCGUCCU-CCAUcuaGUCGGUGUGgua -5'
16174 3' -55.4 NC_004065.1 + 165895 0.66 0.947252
Target:  5'- aGCGGGAGG-AGA--AGCCcuuucuGCGCCGg -3'
miRNA:   3'- aCGUCCUCCaUCUagUCGG------UGUGGUa -5'
16174 3' -55.4 NC_004065.1 + 65345 0.66 0.947252
Target:  5'- aGCAGcugcGGGUGGGUCGGUCGgAUCGa -3'
miRNA:   3'- aCGUCc---UCCAUCUAGUCGGUgUGGUa -5'
16174 3' -55.4 NC_004065.1 + 127997 0.66 0.938162
Target:  5'- cGCGGGucaccgAGGUGGccc-GCCGCGCCAa -3'
miRNA:   3'- aCGUCC------UCCAUCuaguCGGUGUGGUa -5'
16174 3' -55.4 NC_004065.1 + 24406 0.66 0.938162
Target:  5'- aGCAGGuAGauGUAGAUCuuGCCGCugCu- -3'
miRNA:   3'- aCGUCC-UC--CAUCUAGu-CGGUGugGua -5'
16174 3' -55.4 NC_004065.1 + 140136 0.66 0.933262
Target:  5'- gGCacGGGAGGgacgAGAUCAGCgggaGCACgCAg -3'
miRNA:   3'- aCG--UCCUCCa---UCUAGUCGg---UGUG-GUa -5'
16174 3' -55.4 NC_004065.1 + 187952 0.66 0.931236
Target:  5'- cGCAcaucagcgAGGUCAGCCACACCAg -3'
miRNA:   3'- aCGUccucca--UCUAGUCGGUGUGGUa -5'
16174 3' -55.4 NC_004065.1 + 210145 0.67 0.928125
Target:  5'- gGCGGcgacGGGGUGGAUCAGggucucuagCACGCCAUu -3'
miRNA:   3'- aCGUC----CUCCAUCUAGUCg--------GUGUGGUA- -5'
16174 3' -55.4 NC_004065.1 + 150823 0.67 0.922749
Target:  5'- cGCAGGAucuGGUGGAUCGucuGCCcgauacacGCGCCc- -3'
miRNA:   3'- aCGUCCU---CCAUCUAGU---CGG--------UGUGGua -5'
16174 3' -55.4 NC_004065.1 + 122902 0.67 0.917136
Target:  5'- gGUAGGGGauggGGAUCA-CCGCGCCGa -3'
miRNA:   3'- aCGUCCUCca--UCUAGUcGGUGUGGUa -5'
16174 3' -55.4 NC_004065.1 + 130788 0.67 0.917136
Target:  5'- cUGCAGGcguucgcgAGGcGGAUC-GCCugGCCGg -3'
miRNA:   3'- -ACGUCC--------UCCaUCUAGuCGGugUGGUa -5'
16174 3' -55.4 NC_004065.1 + 131291 0.67 0.916561
Target:  5'- aGCGGGGGGUuuccugcgcggaaGGAgucgCAGUCAUAUCGa -3'
miRNA:   3'- aCGUCCUCCA-------------UCUa---GUCGGUGUGGUa -5'
16174 3' -55.4 NC_004065.1 + 194125 0.68 0.898877
Target:  5'- aUGCGGGAGGUu--UC-GCCAUuuGCCAg -3'
miRNA:   3'- -ACGUCCUCCAucuAGuCGGUG--UGGUa -5'
16174 3' -55.4 NC_004065.1 + 38465 0.68 0.898877
Target:  5'- gGCAcacuGGuGGUGGG-CAGCgACACCAc -3'
miRNA:   3'- aCGU----CCuCCAUCUaGUCGgUGUGGUa -5'
16174 3' -55.4 NC_004065.1 + 130466 0.68 0.892326
Target:  5'- gUGCGGGAGGaUGGcgcCGGaCgGCACCAUg -3'
miRNA:   3'- -ACGUCCUCC-AUCua-GUC-GgUGUGGUA- -5'
16174 3' -55.4 NC_004065.1 + 27124 0.68 0.892326
Target:  5'- cUGCAGaucguGAGGUGGAagGGCUACGCgAg -3'
miRNA:   3'- -ACGUC-----CUCCAUCUagUCGGUGUGgUa -5'
16174 3' -55.4 NC_004065.1 + 36186 0.68 0.885547
Target:  5'- cGCGGGGGGgcGcgCAGCa--ACCAUc -3'
miRNA:   3'- aCGUCCUCCauCuaGUCGgugUGGUA- -5'
16174 3' -55.4 NC_004065.1 + 198526 0.68 0.878545
Target:  5'- cGCAcGAGGc-GAuguaccUCAGCCGCACCAg -3'
miRNA:   3'- aCGUcCUCCauCU------AGUCGGUGUGGUa -5'
16174 3' -55.4 NC_004065.1 + 125148 0.69 0.856246
Target:  5'- aGCcGcGuGGc-GAUCAGCCGCACCAUg -3'
miRNA:   3'- aCGuC-CuCCauCUAGUCGGUGUGGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.