miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16174 5' -53.4 NC_004065.1 + 29040 0.66 0.991893
Target:  5'- --cCGGcGUcGCGACCCGUcaccacgCACCGa -3'
miRNA:   3'- guuGCCaUAuCGCUGGGCGua-----GUGGC- -5'
16174 5' -53.4 NC_004065.1 + 153638 0.66 0.991893
Target:  5'- gGACGGc--GGCGAgcucaUCCGCGgcggCGCCGg -3'
miRNA:   3'- gUUGCCauaUCGCU-----GGGCGUa---GUGGC- -5'
16174 5' -53.4 NC_004065.1 + 131871 0.66 0.991893
Target:  5'- gCGGCGGUGgcggcGGCGACU---AUCACCGc -3'
miRNA:   3'- -GUUGCCAUa----UCGCUGGgcgUAGUGGC- -5'
16174 5' -53.4 NC_004065.1 + 23271 0.66 0.991893
Target:  5'- -cGCGGUAcgacUGGCG-CCCGUA--GCCGc -3'
miRNA:   3'- guUGCCAU----AUCGCuGGGCGUagUGGC- -5'
16174 5' -53.4 NC_004065.1 + 67079 0.66 0.991893
Target:  5'- aAACGaug-GGCGAUCCGCGUCGauCUGg -3'
miRNA:   3'- gUUGCcauaUCGCUGGGCGUAGU--GGC- -5'
16174 5' -53.4 NC_004065.1 + 56531 0.66 0.991786
Target:  5'- -uAUGGUGUGGCuGAucuaccuCCUGCAUC-CCGc -3'
miRNA:   3'- guUGCCAUAUCG-CU-------GGGCGUAGuGGC- -5'
16174 5' -53.4 NC_004065.1 + 118100 0.66 0.990766
Target:  5'- aCGGCGGcgcccAUGGCGuCUCuCGUCGCCGc -3'
miRNA:   3'- -GUUGCCa----UAUCGCuGGGcGUAGUGGC- -5'
16174 5' -53.4 NC_004065.1 + 147887 0.66 0.990766
Target:  5'- ---aGGUAcAGCG-UCCGCGcCGCCGg -3'
miRNA:   3'- guugCCAUaUCGCuGGGCGUaGUGGC- -5'
16174 5' -53.4 NC_004065.1 + 137818 0.66 0.990766
Target:  5'- uGugGGccUGUucGCGGCCCGCGUC-UCGu -3'
miRNA:   3'- gUugCC--AUAu-CGCUGGGCGUAGuGGC- -5'
16174 5' -53.4 NC_004065.1 + 29709 0.66 0.990766
Target:  5'- cCGACGGgcUGGUaccucuGCCUGCGUucCGCCGa -3'
miRNA:   3'- -GUUGCCauAUCGc-----UGGGCGUA--GUGGC- -5'
16174 5' -53.4 NC_004065.1 + 81053 0.66 0.990526
Target:  5'- aGACGGgaacGUGGUGgaACCCGCAcuccgguucgagCACCGu -3'
miRNA:   3'- gUUGCCa---UAUCGC--UGGGCGUa-----------GUGGC- -5'
16174 5' -53.4 NC_004065.1 + 103259 0.66 0.989519
Target:  5'- uGAUGGUGUccaaguacAGCGagaagaGCCC-CAUCACCa -3'
miRNA:   3'- gUUGCCAUA--------UCGC------UGGGcGUAGUGGc -5'
16174 5' -53.4 NC_004065.1 + 128587 0.66 0.989519
Target:  5'- uCGGCGGcgAaGGCGcAUCCGCAcgCGCCa -3'
miRNA:   3'- -GUUGCCa-UaUCGC-UGGGCGUa-GUGGc -5'
16174 5' -53.4 NC_004065.1 + 103999 0.66 0.989519
Target:  5'- ---aGGUGggcgAGCGGCUCGUggCGCUGg -3'
miRNA:   3'- guugCCAUa---UCGCUGGGCGuaGUGGC- -5'
16174 5' -53.4 NC_004065.1 + 212838 0.66 0.989387
Target:  5'- aCAACGGUgaucaggAUAGCGAguaUCGUGUCgaGCCGa -3'
miRNA:   3'- -GUUGCCA-------UAUCGCUg--GGCGUAG--UGGC- -5'
16174 5' -53.4 NC_004065.1 + 58203 0.66 0.988144
Target:  5'- gCGACGGgcauGCGgucaaaGCCCaCGUCGCCGc -3'
miRNA:   3'- -GUUGCCauauCGC------UGGGcGUAGUGGC- -5'
16174 5' -53.4 NC_004065.1 + 197249 0.66 0.988144
Target:  5'- gAGCGGguggcgugccgAUAGgGugCCGgAUCAUCGg -3'
miRNA:   3'- gUUGCCa----------UAUCgCugGGCgUAGUGGC- -5'
16174 5' -53.4 NC_004065.1 + 130883 0.66 0.988144
Target:  5'- -cACGGUGUuuaccgccgucGGcCGcACCUGCGUUGCCGu -3'
miRNA:   3'- guUGCCAUA-----------UC-GC-UGGGCGUAGUGGC- -5'
16174 5' -53.4 NC_004065.1 + 176333 0.66 0.988144
Target:  5'- gGGCGGUcgGGCGGCgacaCG-AUCAUCGg -3'
miRNA:   3'- gUUGCCAuaUCGCUGg---GCgUAGUGGC- -5'
16174 5' -53.4 NC_004065.1 + 198910 0.66 0.988144
Target:  5'- aGACGGUgacgGUGGUGccuGCCCGCucCACCc -3'
miRNA:   3'- gUUGCCA----UAUCGC---UGGGCGuaGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.