miRNA display CGI


Results 1 - 20 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16175 3' -51.2 NC_004065.1 + 143706 0.66 0.998883
Target:  5'- gACGA--CGAGaccAGGUCGgCGCCGGCGa -3'
miRNA:   3'- -UGCUagGCUU---UCUAGUgGCGGUUGCg -5'
16175 3' -51.2 NC_004065.1 + 157989 0.66 0.998883
Target:  5'- cACGuacUCCGGGugcagCGCCGCCAucaGCGUc -3'
miRNA:   3'- -UGCu--AGGCUUucua-GUGGCGGU---UGCG- -5'
16175 3' -51.2 NC_004065.1 + 140217 0.66 0.998883
Target:  5'- -aGGUCgCGGcgcAAGAcgGCCGCCGAUGUc -3'
miRNA:   3'- ugCUAG-GCU---UUCUagUGGCGGUUGCG- -5'
16175 3' -51.2 NC_004065.1 + 185120 0.66 0.998883
Target:  5'- -aGAUCCGAGGucUCuucuGCUGCCucCGCg -3'
miRNA:   3'- ugCUAGGCUUUcuAG----UGGCGGuuGCG- -5'
16175 3' -51.2 NC_004065.1 + 98862 0.66 0.998883
Target:  5'- uGCGcugCCGGAacggGGGUCGucgUCGCCcACGCg -3'
miRNA:   3'- -UGCua-GGCUU----UCUAGU---GGCGGuUGCG- -5'
16175 3' -51.2 NC_004065.1 + 210840 0.66 0.998883
Target:  5'- aGCGG-CCGGAGGuGUC-CCGCCucgGCa -3'
miRNA:   3'- -UGCUaGGCUUUC-UAGuGGCGGuugCG- -5'
16175 3' -51.2 NC_004065.1 + 166779 0.66 0.998883
Target:  5'- aGCGAUCgGcAGGGUCGaccguCCGCCuuUGUg -3'
miRNA:   3'- -UGCUAGgCuUUCUAGU-----GGCGGuuGCG- -5'
16175 3' -51.2 NC_004065.1 + 149557 0.66 0.998883
Target:  5'- uUGAaggCCGuuGGAgcccUCGCCGCgAACGUu -3'
miRNA:   3'- uGCUa--GGCuuUCU----AGUGGCGgUUGCG- -5'
16175 3' -51.2 NC_004065.1 + 153368 0.66 0.998883
Target:  5'- cGCGAUCCGuu---UCGa-GCCGAUGCu -3'
miRNA:   3'- -UGCUAGGCuuucuAGUggCGGUUGCG- -5'
16175 3' -51.2 NC_004065.1 + 199643 0.66 0.998883
Target:  5'- cGCGAUCCGccAGGUCA-CGUCcAUGUc -3'
miRNA:   3'- -UGCUAGGCuuUCUAGUgGCGGuUGCG- -5'
16175 3' -51.2 NC_004065.1 + 27881 0.66 0.998883
Target:  5'- gACGG-CCGGGAccuccguccGAUC-CUGCCGACGg -3'
miRNA:   3'- -UGCUaGGCUUU---------CUAGuGGCGGUUGCg -5'
16175 3' -51.2 NC_004065.1 + 144637 0.66 0.998883
Target:  5'- uCGAcagCgCGAAAGcgCugCGCUcGCGCg -3'
miRNA:   3'- uGCUa--G-GCUUUCuaGugGCGGuUGCG- -5'
16175 3' -51.2 NC_004065.1 + 87402 0.66 0.998883
Target:  5'- cGCGAUCgCGGAuucgCACUGCaugccgaAGCGCa -3'
miRNA:   3'- -UGCUAG-GCUUucuaGUGGCGg------UUGCG- -5'
16175 3' -51.2 NC_004065.1 + 173750 0.66 0.998883
Target:  5'- gACGAgacgcucuacaUCCacGAAuuGAUCGCCGCCAGgGa -3'
miRNA:   3'- -UGCU-----------AGG--CUUu-CUAGUGGCGGUUgCg -5'
16175 3' -51.2 NC_004065.1 + 126166 0.66 0.998883
Target:  5'- cAUGAUCgCGuggugcgcGAUCGCCGUCAcgGCGUu -3'
miRNA:   3'- -UGCUAG-GCuuu-----CUAGUGGCGGU--UGCG- -5'
16175 3' -51.2 NC_004065.1 + 5636 0.66 0.998883
Target:  5'- cACGGUgacgCCGAcGGAaCGCCGCCAcAUGg -3'
miRNA:   3'- -UGCUA----GGCUuUCUaGUGGCGGU-UGCg -5'
16175 3' -51.2 NC_004065.1 + 217619 0.66 0.998883
Target:  5'- gACGGUagcuaccguugaUCGAGAGAcUCGCCGCgAACu- -3'
miRNA:   3'- -UGCUA------------GGCUUUCU-AGUGGCGgUUGcg -5'
16175 3' -51.2 NC_004065.1 + 27733 0.66 0.998883
Target:  5'- cGCGcuGUCC-AAAGAUCugaugaccCCGCC-GCGCa -3'
miRNA:   3'- -UGC--UAGGcUUUCUAGu-------GGCGGuUGCG- -5'
16175 3' -51.2 NC_004065.1 + 120158 0.66 0.998654
Target:  5'- gGCGAcgCCGGugg--CACCGCCcggcaccuGCGCg -3'
miRNA:   3'- -UGCUa-GGCUuucuaGUGGCGGu-------UGCG- -5'
16175 3' -51.2 NC_004065.1 + 184023 0.66 0.998654
Target:  5'- -aGAcCCGAGuucaaCGCCGCCAcgGCGCc -3'
miRNA:   3'- ugCUaGGCUUucua-GUGGCGGU--UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.