miRNA display CGI


Results 1 - 20 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16175 3' -51.2 NC_004065.1 + 78806 0.66 0.998206
Target:  5'- uCGAUCCGAcucccguucgacuucAAG-UCGCa-CCGGCGCa -3'
miRNA:   3'- uGCUAGGCU---------------UUCuAGUGgcGGUUGCG- -5'
16175 3' -51.2 NC_004065.1 + 201006 0.66 0.998387
Target:  5'- cCGGUCUGAcucGAg-GCCGCguGCGCg -3'
miRNA:   3'- uGCUAGGCUuu-CUagUGGCGguUGCG- -5'
16175 3' -51.2 NC_004065.1 + 19287 0.66 0.998387
Target:  5'- cGCGA--CGggGGAUCuggACCGuCCGGCGa -3'
miRNA:   3'- -UGCUagGCuuUCUAG---UGGC-GGUUGCg -5'
16175 3' -51.2 NC_004065.1 + 188609 0.66 0.997718
Target:  5'- uCGGUCCGucacGGGAccgugUCGCCGgCGGCGa -3'
miRNA:   3'- uGCUAGGCu---UUCU-----AGUGGCgGUUGCg -5'
16175 3' -51.2 NC_004065.1 + 129642 0.66 0.997718
Target:  5'- uGCGGUCUGGAacacAGAcUgGCCGUCGACcgGCu -3'
miRNA:   3'- -UGCUAGGCUU----UCU-AgUGGCGGUUG--CG- -5'
16175 3' -51.2 NC_004065.1 + 145750 0.66 0.997304
Target:  5'- gAUGAgugcgCCGAucGcGUCGCgCGCCGGuCGCg -3'
miRNA:   3'- -UGCUa----GGCUuuC-UAGUG-GCGGUU-GCG- -5'
16175 3' -51.2 NC_004065.1 + 34650 0.66 0.997304
Target:  5'- cCGGUcCCGGAGGaAUC-CCGCUAuCGUg -3'
miRNA:   3'- uGCUA-GGCUUUC-UAGuGGCGGUuGCG- -5'
16175 3' -51.2 NC_004065.1 + 97602 0.66 0.997304
Target:  5'- cACG--UCGAAGGAg-GCCGCCGcCGCu -3'
miRNA:   3'- -UGCuaGGCUUUCUagUGGCGGUuGCG- -5'
16175 3' -51.2 NC_004065.1 + 108620 0.66 0.998387
Target:  5'- ----cCUGcAGGGUCugCGCCAgcuGCGCg -3'
miRNA:   3'- ugcuaGGCuUUCUAGugGCGGU---UGCG- -5'
16175 3' -51.2 NC_004065.1 + 210955 0.66 0.997259
Target:  5'- uCGAUCCGAAAGAUaucagacgACUGCUcuagauugauacuGugGCg -3'
miRNA:   3'- uGCUAGGCUUUCUAg-------UGGCGG-------------UugCG- -5'
16175 3' -51.2 NC_004065.1 + 173750 0.66 0.998883
Target:  5'- gACGAgacgcucuacaUCCacGAAuuGAUCGCCGCCAGgGa -3'
miRNA:   3'- -UGCU-----------AGG--CUUu-CUAGUGGCGGUUgCg -5'
16175 3' -51.2 NC_004065.1 + 226454 0.66 0.998387
Target:  5'- cCGAUCgaGAccGGGcUCGCCuucuGCCAGCGCc -3'
miRNA:   3'- uGCUAGg-CU--UUCuAGUGG----CGGUUGCG- -5'
16175 3' -51.2 NC_004065.1 + 115973 0.66 0.997718
Target:  5'- gGCGuccAUCUGGgcgAAGAggcgcUCGuCCGCCGACGUg -3'
miRNA:   3'- -UGC---UAGGCU---UUCU-----AGU-GGCGGUUGCG- -5'
16175 3' -51.2 NC_004065.1 + 53234 0.66 0.997304
Target:  5'- cUGGUCC-AAcGcgCuCCGCCGGCGCg -3'
miRNA:   3'- uGCUAGGcUUuCuaGuGGCGGUUGCG- -5'
16175 3' -51.2 NC_004065.1 + 142410 0.66 0.998387
Target:  5'- cGCGggCCaucuu-UCGCCuGCCGGCGCg -3'
miRNA:   3'- -UGCuaGGcuuucuAGUGG-CGGUUGCG- -5'
16175 3' -51.2 NC_004065.1 + 113701 0.66 0.997348
Target:  5'- cCGAcgCCGucgccgcugcCGCCGCCGACGCc -3'
miRNA:   3'- uGCUa-GGCuuucua----GUGGCGGUUGCG- -5'
16175 3' -51.2 NC_004065.1 + 221705 0.66 0.997718
Target:  5'- cGCGAUCCGuucggccgucuGAGGUacacgACCGCUAAcacCGCg -3'
miRNA:   3'- -UGCUAGGCu----------UUCUAg----UGGCGGUU---GCG- -5'
16175 3' -51.2 NC_004065.1 + 221753 0.66 0.997122
Target:  5'- cCGAUCaguccgaugagcaGAAAGGUCACgGCCGcgACGa -3'
miRNA:   3'- uGCUAGg------------CUUUCUAGUGgCGGU--UGCg -5'
16175 3' -51.2 NC_004065.1 + 164676 0.66 0.997168
Target:  5'- uCGAUCCGAccGAcCcacccgcagcugcuGCCGCCGcCGCc -3'
miRNA:   3'- uGCUAGGCUuuCUaG--------------UGGCGGUuGCG- -5'
16175 3' -51.2 NC_004065.1 + 116771 0.66 0.998387
Target:  5'- -gGGUCCGA--GAUCGCCuUCGguuGCGCg -3'
miRNA:   3'- ugCUAGGCUuuCUAGUGGcGGU---UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.