miRNA display CGI


Results 21 - 40 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16175 3' -51.2 NC_004065.1 + 123290 0.66 0.998654
Target:  5'- -aGGUCCGuc---UCGCCGUgGAUGCa -3'
miRNA:   3'- ugCUAGGCuuucuAGUGGCGgUUGCG- -5'
16175 3' -51.2 NC_004065.1 + 53234 0.66 0.997304
Target:  5'- cUGGUCC-AAcGcgCuCCGCCGGCGCg -3'
miRNA:   3'- uGCUAGGcUUuCuaGuGGCGGUUGCG- -5'
16175 3' -51.2 NC_004065.1 + 129642 0.66 0.997718
Target:  5'- uGCGGUCUGGAacacAGAcUgGCCGUCGACcgGCu -3'
miRNA:   3'- -UGCUAGGCUU----UCU-AgUGGCGGUUG--CG- -5'
16175 3' -51.2 NC_004065.1 + 101395 0.66 0.997304
Target:  5'- gGCGGUCCccu-GAcCuCCGCCAACGa -3'
miRNA:   3'- -UGCUAGGcuuuCUaGuGGCGGUUGCg -5'
16175 3' -51.2 NC_004065.1 + 78806 0.66 0.998206
Target:  5'- uCGAUCCGAcucccguucgacuucAAG-UCGCa-CCGGCGCa -3'
miRNA:   3'- uGCUAGGCU---------------UUCuAGUGgcGGUUGCG- -5'
16175 3' -51.2 NC_004065.1 + 44247 0.66 0.998654
Target:  5'- cAUGAUCCuGGugGGGAUgCugUGCCAgACGCc -3'
miRNA:   3'- -UGCUAGG-CU--UUCUA-GugGCGGU-UGCG- -5'
16175 3' -51.2 NC_004065.1 + 34650 0.66 0.997304
Target:  5'- cCGGUcCCGGAGGaAUC-CCGCUAuCGUg -3'
miRNA:   3'- uGCUA-GGCUUUC-UAGuGGCGGUuGCG- -5'
16175 3' -51.2 NC_004065.1 + 162040 0.66 0.998387
Target:  5'- --cGUCCGuguuauuuGAUUGCCGCgAACGCc -3'
miRNA:   3'- ugcUAGGCuuu-----CUAGUGGCGgUUGCG- -5'
16175 3' -51.2 NC_004065.1 + 118714 0.66 0.997718
Target:  5'- gAUGAcgCCGAcGAGAUCcUUGCCGGCGg -3'
miRNA:   3'- -UGCUa-GGCU-UUCUAGuGGCGGUUGCg -5'
16175 3' -51.2 NC_004065.1 + 126166 0.66 0.998883
Target:  5'- cAUGAUCgCGuggugcgcGAUCGCCGUCAcgGCGUu -3'
miRNA:   3'- -UGCUAG-GCuuu-----CUAGUGGCGGU--UGCG- -5'
16175 3' -51.2 NC_004065.1 + 217619 0.66 0.998883
Target:  5'- gACGGUagcuaccguugaUCGAGAGAcUCGCCGCgAACu- -3'
miRNA:   3'- -UGCUA------------GGCUUUCU-AGUGGCGgUUGcg -5'
16175 3' -51.2 NC_004065.1 + 152807 0.66 0.997168
Target:  5'- cACGAUcagcguggccaucgCCGugcGGggCGCCGCC-GCGCa -3'
miRNA:   3'- -UGCUA--------------GGCuu-UCuaGUGGCGGuUGCG- -5'
16175 3' -51.2 NC_004065.1 + 93518 0.66 0.997304
Target:  5'- cGCGuUCUGGuagaugacgcuGGGGUCcagaccgccggaGCCGCCGAUGCu -3'
miRNA:   3'- -UGCuAGGCU-----------UUCUAG------------UGGCGGUUGCG- -5'
16175 3' -51.2 NC_004065.1 + 98862 0.66 0.998883
Target:  5'- uGCGcugCCGGAacggGGGUCGucgUCGCCcACGCg -3'
miRNA:   3'- -UGCua-GGCUU----UCUAGU---GGCGGuUGCG- -5'
16175 3' -51.2 NC_004065.1 + 108620 0.66 0.998387
Target:  5'- ----cCUGcAGGGUCugCGCCAgcuGCGCg -3'
miRNA:   3'- ugcuaGGCuUUCUAGugGCGGU---UGCG- -5'
16175 3' -51.2 NC_004065.1 + 199222 0.66 0.998654
Target:  5'- gGCGAuguaccguccgUCCGucAGucGUCAUCGUCGGCGUc -3'
miRNA:   3'- -UGCU-----------AGGCuuUC--UAGUGGCGGUUGCG- -5'
16175 3' -51.2 NC_004065.1 + 199643 0.66 0.998883
Target:  5'- cGCGAUCCGccAGGUCA-CGUCcAUGUc -3'
miRNA:   3'- -UGCUAGGCuuUCUAGUgGCGGuUGCG- -5'
16175 3' -51.2 NC_004065.1 + 143706 0.66 0.998883
Target:  5'- gACGA--CGAGaccAGGUCGgCGCCGGCGa -3'
miRNA:   3'- -UGCUagGCUU---UCUAGUgGCGGUUGCg -5'
16175 3' -51.2 NC_004065.1 + 144637 0.66 0.998883
Target:  5'- uCGAcagCgCGAAAGcgCugCGCUcGCGCg -3'
miRNA:   3'- uGCUa--G-GCUUUCuaGugGCGGuUGCG- -5'
16175 3' -51.2 NC_004065.1 + 27733 0.66 0.998883
Target:  5'- cGCGcuGUCC-AAAGAUCugaugaccCCGCC-GCGCa -3'
miRNA:   3'- -UGC--UAGGcUUUCUAGu-------GGCGGuUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.