Results 1 - 20 of 305 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16175 | 3' | -51.2 | NC_004065.1 | + | 173952 | 1.13 | 0.007967 |
Target: 5'- cACGAUCCGAAAGAUCACCGCCAACGCg -3' miRNA: 3'- -UGCUAGGCUUUCUAGUGGCGGUUGCG- -5' |
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16175 | 3' | -51.2 | NC_004065.1 | + | 161786 | 0.86 | 0.294396 |
Target: 5'- cCGGUCCGuccucGUCACCGCCGACGCg -3' miRNA: 3'- uGCUAGGCuuuc-UAGUGGCGGUUGCG- -5' |
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16175 | 3' | -51.2 | NC_004065.1 | + | 175517 | 0.81 | 0.531654 |
Target: 5'- cGCGuccgCCGAAAGAguaaCGCCGCCAACGa -3' miRNA: 3'- -UGCua--GGCUUUCUa---GUGGCGGUUGCg -5' |
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16175 | 3' | -51.2 | NC_004065.1 | + | 101427 | 0.8 | 0.56151 |
Target: 5'- -aGGUCgGAgaaGAGGUCGCCGCCGGCGg -3' miRNA: 3'- ugCUAGgCU---UUCUAGUGGCGGUUGCg -5' |
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16175 | 3' | -51.2 | NC_004065.1 | + | 94612 | 0.79 | 0.642779 |
Target: 5'- aGCGGUCCGAucggcuccugacGGGGUCgggcGCgGCCGGCGCg -3' miRNA: 3'- -UGCUAGGCU------------UUCUAG----UGgCGGUUGCG- -5' |
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16175 | 3' | -51.2 | NC_004065.1 | + | 104673 | 0.78 | 0.663165 |
Target: 5'- cGCGcgCCGGAGGGUCACgaGgCGACGCu -3' miRNA: 3'- -UGCuaGGCUUUCUAGUGg-CgGUUGCG- -5' |
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16175 | 3' | -51.2 | NC_004065.1 | + | 78630 | 0.78 | 0.682441 |
Target: 5'- cCGAcCCGccuccgccacccaAGAGAUCgGCCGCCAGCGCa -3' miRNA: 3'- uGCUaGGC-------------UUUCUAG-UGGCGGUUGCG- -5' |
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16175 | 3' | -51.2 | NC_004065.1 | + | 92144 | 0.78 | 0.693536 |
Target: 5'- aGCGcgCUG-AAGAUCACC-CCGACGCu -3' miRNA: 3'- -UGCuaGGCuUUCUAGUGGcGGUUGCG- -5' |
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16175 | 3' | -51.2 | NC_004065.1 | + | 200513 | 0.78 | 0.703569 |
Target: 5'- gUGAUCCGAucGGAUCGCCGCgcacagggcgucCAugGCg -3' miRNA: 3'- uGCUAGGCUu-UCUAGUGGCG------------GUugCG- -5' |
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16175 | 3' | -51.2 | NC_004065.1 | + | 63528 | 0.77 | 0.723446 |
Target: 5'- cGCGG-CCGu-AGAUCGCCGCgAGCGUg -3' miRNA: 3'- -UGCUaGGCuuUCUAGUGGCGgUUGCG- -5' |
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16175 | 3' | -51.2 | NC_004065.1 | + | 120576 | 0.77 | 0.743011 |
Target: 5'- uCGAUCUGcguGAGGcgauacacgCGCCGCCAGCGCg -3' miRNA: 3'- uGCUAGGCu--UUCUa--------GUGGCGGUUGCG- -5' |
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16175 | 3' | -51.2 | NC_004065.1 | + | 126271 | 0.77 | 0.752654 |
Target: 5'- gACGGUCCGGAGGcccCGCCGCgcgaacCGACGCc -3' miRNA: 3'- -UGCUAGGCUUUCua-GUGGCG------GUUGCG- -5' |
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16175 | 3' | -51.2 | NC_004065.1 | + | 91774 | 0.76 | 0.76219 |
Target: 5'- gGCGAggCUgGAGAGAUCGucguCCGCCAugGCg -3' miRNA: 3'- -UGCUa-GG-CUUUCUAGU----GGCGGUugCG- -5' |
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16175 | 3' | -51.2 | NC_004065.1 | + | 83265 | 0.76 | 0.76219 |
Target: 5'- -aGAUgCGgcAGA-CGCCGCCGACGCc -3' miRNA: 3'- ugCUAgGCuuUCUaGUGGCGGUUGCG- -5' |
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16175 | 3' | -51.2 | NC_004065.1 | + | 24580 | 0.76 | 0.771612 |
Target: 5'- cGCGGUCCGcgcgugucGUCGCCGCCAcCGCc -3' miRNA: 3'- -UGCUAGGCuuuc----UAGUGGCGGUuGCG- -5' |
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16175 | 3' | -51.2 | NC_004065.1 | + | 130793 | 0.76 | 0.78091 |
Target: 5'- gGCGuUCgCGAGgcGGAUCGCCugGCCGGCGCu -3' miRNA: 3'- -UGCuAG-GCUU--UCUAGUGG--CGGUUGCG- -5' |
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16175 | 3' | -51.2 | NC_004065.1 | + | 201982 | 0.76 | 0.790075 |
Target: 5'- cGCGAgaacUCGucGAGGUCguugGCCGCCAACGCg -3' miRNA: 3'- -UGCUa---GGCu-UUCUAG----UGGCGGUUGCG- -5' |
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16175 | 3' | -51.2 | NC_004065.1 | + | 68377 | 0.76 | 0.799099 |
Target: 5'- gACGA-CCGAggcgAAGAUCGCCGCguuCGugGCg -3' miRNA: 3'- -UGCUaGGCU----UUCUAGUGGCG---GUugCG- -5' |
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16175 | 3' | -51.2 | NC_004065.1 | + | 169287 | 0.75 | 0.816687 |
Target: 5'- cACGAUCUucaGGuugGGGAUCuuCGCCAGCGCg -3' miRNA: 3'- -UGCUAGG---CU---UUCUAGugGCGGUUGCG- -5' |
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16175 | 3' | -51.2 | NC_004065.1 | + | 71859 | 0.75 | 0.816687 |
Target: 5'- -gGAUCCgGAAAGcgCgGCCGaCCAGCGCg -3' miRNA: 3'- ugCUAGG-CUUUCuaG-UGGC-GGUUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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