miRNA display CGI


Results 21 - 40 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16175 3' -51.2 NC_004065.1 + 4616 0.75 0.833607
Target:  5'- cACGAcccUUCGAGAGGgagcggcaccaUCAgCGCCAGCGCc -3'
miRNA:   3'- -UGCU---AGGCUUUCU-----------AGUgGCGGUUGCG- -5'
16175 3' -51.2 NC_004065.1 + 137844 0.75 0.841797
Target:  5'- cACGG-CUGAAAcuugaccgcgucGAUCGCCGCCGACaGCg -3'
miRNA:   3'- -UGCUaGGCUUU------------CUAGUGGCGGUUG-CG- -5'
16175 3' -51.2 NC_004065.1 + 115132 0.74 0.856831
Target:  5'- cGCucUCCGGguagggaGAGGUCACCGCCAucgucgucggGCGCc -3'
miRNA:   3'- -UGcuAGGCU-------UUCUAGUGGCGGU----------UGCG- -5'
16175 3' -51.2 NC_004065.1 + 102862 0.74 0.857603
Target:  5'- aGCGAgagagagaCCGAGAGGgcgaUCGCCGCCGccgguaGCGCc -3'
miRNA:   3'- -UGCUa-------GGCUUUCU----AGUGGCGGU------UGCG- -5'
16175 3' -51.2 NC_004065.1 + 97501 0.74 0.857603
Target:  5'- aGCGAUCUGcggcGGAUCACC-CCGACGa -3'
miRNA:   3'- -UGCUAGGCuu--UCUAGUGGcGGUUGCg -5'
16175 3' -51.2 NC_004065.1 + 123993 0.74 0.857603
Target:  5'- cACGAUCgGcguguugauGAUCACCGCCGucgACGCc -3'
miRNA:   3'- -UGCUAGgCuuu------CUAGUGGCGGU---UGCG- -5'
16175 3' -51.2 NC_004065.1 + 133512 0.74 0.857603
Target:  5'- uACGGUCCGAGucGGUCGCCGagAugGUg -3'
miRNA:   3'- -UGCUAGGCUUu-CUAGUGGCggUugCG- -5'
16175 3' -51.2 NC_004065.1 + 127928 0.74 0.857603
Target:  5'- uCGGUCCGGcc-AUCGCCGCCcGCGUc -3'
miRNA:   3'- uGCUAGGCUuucUAGUGGCGGuUGCG- -5'
16175 3' -51.2 NC_004065.1 + 30063 0.74 0.865204
Target:  5'- uCGAUCCcAGAGAcgggACCGCCGugGCg -3'
miRNA:   3'- uGCUAGGcUUUCUag--UGGCGGUugCG- -5'
16175 3' -51.2 NC_004065.1 + 178173 0.74 0.872597
Target:  5'- cCGAacaCCGAGAgGAUguUCGCCAACGCg -3'
miRNA:   3'- uGCUa--GGCUUU-CUAguGGCGGUUGCG- -5'
16175 3' -51.2 NC_004065.1 + 87229 0.74 0.879775
Target:  5'- uUGAUCUcGAAGAUgGCCGCCcccGGCGCc -3'
miRNA:   3'- uGCUAGGcUUUCUAgUGGCGG---UUGCG- -5'
16175 3' -51.2 NC_004065.1 + 163033 0.74 0.879775
Target:  5'- cACGGgcgCCGAcuGGUCACgGCUuGCGCg -3'
miRNA:   3'- -UGCUa--GGCUuuCUAGUGgCGGuUGCG- -5'
16175 3' -51.2 NC_004065.1 + 165672 0.74 0.879775
Target:  5'- cGCGAUCCGAGAgGAUCugCcaucCCAGgGCc -3'
miRNA:   3'- -UGCUAGGCUUU-CUAGugGc---GGUUgCG- -5'
16175 3' -51.2 NC_004065.1 + 139387 0.74 0.886734
Target:  5'- cGCGGUCUGAuGGGGUCGCgacgGCCcGCGCg -3'
miRNA:   3'- -UGCUAGGCU-UUCUAGUGg---CGGuUGCG- -5'
16175 3' -51.2 NC_004065.1 + 53004 0.73 0.899976
Target:  5'- uCGAUCCGGAGGAguUCGCUGaCA-CGCg -3'
miRNA:   3'- uGCUAGGCUUUCU--AGUGGCgGUuGCG- -5'
16175 3' -51.2 NC_004065.1 + 163863 0.73 0.899976
Target:  5'- cACGAUCCGAGaccggagagGGAUCuggaACCGCCuaggaGCa -3'
miRNA:   3'- -UGCUAGGCUU---------UCUAG----UGGCGGuug--CG- -5'
16175 3' -51.2 NC_004065.1 + 195542 0.73 0.906252
Target:  5'- cGCGAUCUauGAAcAGGUCAgacuCCGCCAuCGCg -3'
miRNA:   3'- -UGCUAGG--CUU-UCUAGU----GGCGGUuGCG- -5'
16175 3' -51.2 NC_004065.1 + 170436 0.73 0.906252
Target:  5'- -gGAUCgaCGAAGGA-CGCCGCCGgagGCGCc -3'
miRNA:   3'- ugCUAG--GCUUUCUaGUGGCGGU---UGCG- -5'
16175 3' -51.2 NC_004065.1 + 161431 0.73 0.906252
Target:  5'- uGCGAcgugUCGGcgcucuGGAUCGCCGCCGcCGCg -3'
miRNA:   3'- -UGCUa---GGCUu-----UCUAGUGGCGGUuGCG- -5'
16175 3' -51.2 NC_004065.1 + 140857 0.73 0.912294
Target:  5'- gACGGcCCuGAAGGcCGCCGCCAGCGa -3'
miRNA:   3'- -UGCUaGGcUUUCUaGUGGCGGUUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.