miRNA display CGI


Results 21 - 40 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16175 3' -51.2 NC_004065.1 + 96533 0.66 0.998654
Target:  5'- gACGAgUCCGAggagcuggacgAGGAgucgcuggacUCGuCCGCCGACGa -3'
miRNA:   3'- -UGCU-AGGCU-----------UUCU----------AGU-GGCGGUUGCg -5'
16175 3' -51.2 NC_004065.1 + 201367 0.66 0.998654
Target:  5'- cGCGAgcugcgccucgCCGggGGGUgccaCGUCGACGCa -3'
miRNA:   3'- -UGCUa----------GGCuuUCUAgug-GCGGUUGCG- -5'
16175 3' -51.2 NC_004065.1 + 199222 0.66 0.998654
Target:  5'- gGCGAuguaccguccgUCCGucAGucGUCAUCGUCGGCGUc -3'
miRNA:   3'- -UGCU-----------AGGCuuUC--UAGUGGCGGUUGCG- -5'
16175 3' -51.2 NC_004065.1 + 44247 0.66 0.998654
Target:  5'- cAUGAUCCuGGugGGGAUgCugUGCCAgACGCc -3'
miRNA:   3'- -UGCUAGG-CU--UUCUA-GugGCGGU-UGCG- -5'
16175 3' -51.2 NC_004065.1 + 228855 0.66 0.998654
Target:  5'- aGCGGcgCCGAcgacacaaugGGGAcCACCGC-GGCGCa -3'
miRNA:   3'- -UGCUa-GGCU----------UUCUaGUGGCGgUUGCG- -5'
16175 3' -51.2 NC_004065.1 + 71487 0.66 0.998654
Target:  5'- aGCG-UgCGAGAGAUgCGCCGgUcGCGCu -3'
miRNA:   3'- -UGCuAgGCUUUCUA-GUGGCgGuUGCG- -5'
16175 3' -51.2 NC_004065.1 + 120158 0.66 0.998654
Target:  5'- gGCGAcgCCGGugg--CACCGCCcggcaccuGCGCg -3'
miRNA:   3'- -UGCUa-GGCUuucuaGUGGCGGu-------UGCG- -5'
16175 3' -51.2 NC_004065.1 + 200293 0.66 0.998654
Target:  5'- uGCuGUCCGGAGGAucUCAUCGuCCuGgGCg -3'
miRNA:   3'- -UGcUAGGCUUUCU--AGUGGC-GGuUgCG- -5'
16175 3' -51.2 NC_004065.1 + 175961 0.66 0.998654
Target:  5'- gACGGUgaG-AAGAUUGCCGCUccCGCg -3'
miRNA:   3'- -UGCUAggCuUUCUAGUGGCGGuuGCG- -5'
16175 3' -51.2 NC_004065.1 + 123290 0.66 0.998654
Target:  5'- -aGGUCCGuc---UCGCCGUgGAUGCa -3'
miRNA:   3'- ugCUAGGCuuucuAGUGGCGgUUGCG- -5'
16175 3' -51.2 NC_004065.1 + 134164 0.66 0.998654
Target:  5'- gACGggCCGAugug-CACCGUCGAUGa -3'
miRNA:   3'- -UGCuaGGCUuucuaGUGGCGGUUGCg -5'
16175 3' -51.2 NC_004065.1 + 184023 0.66 0.998654
Target:  5'- -aGAcCCGAGuucaaCGCCGCCAcgGCGCc -3'
miRNA:   3'- ugCUaGGCUUucua-GUGGCGGU--UGCG- -5'
16175 3' -51.2 NC_004065.1 + 32258 0.66 0.998578
Target:  5'- gGCGAUCCGAugaagaccuacuGGGAcCGCCuggagucggcgaucGCCAAgGUg -3'
miRNA:   3'- -UGCUAGGCU------------UUCUaGUGG--------------CGGUUgCG- -5'
16175 3' -51.2 NC_004065.1 + 197164 0.66 0.998387
Target:  5'- cGCGAcCUGuc----CAUCGCCAACGCg -3'
miRNA:   3'- -UGCUaGGCuuucuaGUGGCGGUUGCG- -5'
16175 3' -51.2 NC_004065.1 + 207089 0.66 0.998387
Target:  5'- gGCGAcaaaUCUGAcgacGAGAcggaACCGCCGAcCGCc -3'
miRNA:   3'- -UGCU----AGGCU----UUCUag--UGGCGGUU-GCG- -5'
16175 3' -51.2 NC_004065.1 + 31257 0.66 0.998387
Target:  5'- cUGAUcCCGuuGGGUCugUGCgGACGg -3'
miRNA:   3'- uGCUA-GGCuuUCUAGugGCGgUUGCg -5'
16175 3' -51.2 NC_004065.1 + 108620 0.66 0.998387
Target:  5'- ----cCUGcAGGGUCugCGCCAgcuGCGCg -3'
miRNA:   3'- ugcuaGGCuUUCUAGugGCGGU---UGCG- -5'
16175 3' -51.2 NC_004065.1 + 19287 0.66 0.998387
Target:  5'- cGCGA--CGggGGAUCuggACCGuCCGGCGa -3'
miRNA:   3'- -UGCUagGCuuUCUAG---UGGC-GGUUGCg -5'
16175 3' -51.2 NC_004065.1 + 116771 0.66 0.998387
Target:  5'- -gGGUCCGA--GAUCGCCuUCGguuGCGCg -3'
miRNA:   3'- ugCUAGGCUuuCUAGUGGcGGU---UGCG- -5'
16175 3' -51.2 NC_004065.1 + 201006 0.66 0.998387
Target:  5'- cCGGUCUGAcucGAg-GCCGCguGCGCg -3'
miRNA:   3'- uGCUAGGCUuu-CUagUGGCGguUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.