miRNA display CGI


Results 41 - 60 of 305 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16175 3' -51.2 NC_004065.1 + 31257 0.66 0.998387
Target:  5'- cUGAUcCCGuuGGGUCugUGCgGACGg -3'
miRNA:   3'- uGCUA-GGCuuUCUAGugGCGgUUGCg -5'
16175 3' -51.2 NC_004065.1 + 19287 0.66 0.998387
Target:  5'- cGCGA--CGggGGAUCuggACCGuCCGGCGa -3'
miRNA:   3'- -UGCUagGCuuUCUAG---UGGC-GGUUGCg -5'
16175 3' -51.2 NC_004065.1 + 116771 0.66 0.998387
Target:  5'- -gGGUCCGA--GAUCGCCuUCGguuGCGCg -3'
miRNA:   3'- ugCUAGGCUuuCUAGUGGcGGU---UGCG- -5'
16175 3' -51.2 NC_004065.1 + 108620 0.66 0.998387
Target:  5'- ----cCUGcAGGGUCugCGCCAgcuGCGCg -3'
miRNA:   3'- ugcuaGGCuUUCUAGugGCGGU---UGCG- -5'
16175 3' -51.2 NC_004065.1 + 201006 0.66 0.998387
Target:  5'- cCGGUCUGAcucGAg-GCCGCguGCGCg -3'
miRNA:   3'- uGCUAGGCUuu-CUagUGGCGguUGCG- -5'
16175 3' -51.2 NC_004065.1 + 87611 0.66 0.998358
Target:  5'- gGCGcgCCGGcaggcgaAAGAUgGCCcgcGCgAGCGCg -3'
miRNA:   3'- -UGCuaGGCU-------UUCUAgUGG---CGgUUGCG- -5'
16175 3' -51.2 NC_004065.1 + 78806 0.66 0.998206
Target:  5'- uCGAUCCGAcucccguucgacuucAAG-UCGCa-CCGGCGCa -3'
miRNA:   3'- uGCUAGGCU---------------UUCuAGUGgcGGUUGCG- -5'
16175 3' -51.2 NC_004065.1 + 55434 0.66 0.998077
Target:  5'- gGCGugcuUCCuagcGGGGGUCGCCGCCG-CGa -3'
miRNA:   3'- -UGCu---AGGc---UUUCUAGUGGCGGUuGCg -5'
16175 3' -51.2 NC_004065.1 + 200737 0.66 0.998077
Target:  5'- cCGucuUCCGcGAGGUCcucuugGCCGUCAACGa -3'
miRNA:   3'- uGCu--AGGCuUUCUAG------UGGCGGUUGCg -5'
16175 3' -51.2 NC_004065.1 + 187923 0.66 0.997939
Target:  5'- aACGGUCaCGuacgucggCGCCGgCGACGCg -3'
miRNA:   3'- -UGCUAG-GCuuucua--GUGGCgGUUGCG- -5'
16175 3' -51.2 NC_004065.1 + 188609 0.66 0.997718
Target:  5'- uCGGUCCGucacGGGAccgugUCGCCGgCGGCGa -3'
miRNA:   3'- uGCUAGGCu---UUCU-----AGUGGCgGUUGCg -5'
16175 3' -51.2 NC_004065.1 + 129642 0.66 0.997718
Target:  5'- uGCGGUCUGGAacacAGAcUgGCCGUCGACcgGCu -3'
miRNA:   3'- -UGCUAGGCUU----UCU-AgUGGCGGUUG--CG- -5'
16175 3' -51.2 NC_004065.1 + 115973 0.66 0.997718
Target:  5'- gGCGuccAUCUGGgcgAAGAggcgcUCGuCCGCCGACGUg -3'
miRNA:   3'- -UGC---UAGGCU---UUCU-----AGU-GGCGGUUGCG- -5'
16175 3' -51.2 NC_004065.1 + 170290 0.66 0.997718
Target:  5'- -aGAUCuCGAAAGAguccgcgacggUCGCCGU--GCGCc -3'
miRNA:   3'- ugCUAG-GCUUUCU-----------AGUGGCGguUGCG- -5'
16175 3' -51.2 NC_004065.1 + 186631 0.66 0.997718
Target:  5'- gACGAUCgaaCGGGuGGUCggGCCGCCGauACGUc -3'
miRNA:   3'- -UGCUAG---GCUUuCUAG--UGGCGGU--UGCG- -5'
16175 3' -51.2 NC_004065.1 + 187179 0.66 0.997718
Target:  5'- cGCGcucUCCGAGGGGUCucgACCGaCCcucCGCa -3'
miRNA:   3'- -UGCu--AGGCUUUCUAG---UGGC-GGuu-GCG- -5'
16175 3' -51.2 NC_004065.1 + 118714 0.66 0.997718
Target:  5'- gAUGAcgCCGAcGAGAUCcUUGCCGGCGg -3'
miRNA:   3'- -UGCUa-GGCU-UUCUAGuGGCGGUUGCg -5'
16175 3' -51.2 NC_004065.1 + 95140 0.66 0.997718
Target:  5'- gGCGAgUCCGu-AGcgacaguucucGUCGCCGCCGcCGUg -3'
miRNA:   3'- -UGCU-AGGCuuUC-----------UAGUGGCGGUuGCG- -5'
16175 3' -51.2 NC_004065.1 + 184901 0.66 0.997718
Target:  5'- gACGAgUCCGAcGAG-UCGCCuucGCCGcCGCu -3'
miRNA:   3'- -UGCU-AGGCU-UUCuAGUGG---CGGUuGCG- -5'
16175 3' -51.2 NC_004065.1 + 2542 0.66 0.997718
Target:  5'- cUGGUCCGAucGGUCgACgGCCGucCGUc -3'
miRNA:   3'- uGCUAGGCUuuCUAG-UGgCGGUu-GCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.