miRNA display CGI


Results 1 - 20 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16175 3' -51.2 NC_004065.1 + 500 0.67 0.993944
Target:  5'- cGCG-UCCGcgggaaggcgggguGAGGcgCcCCGCCAGCGUg -3'
miRNA:   3'- -UGCuAGGC--------------UUUCuaGuGGCGGUUGCG- -5'
16175 3' -51.2 NC_004065.1 + 2542 0.66 0.997718
Target:  5'- cUGGUCCGAucGGUCgACgGCCGucCGUc -3'
miRNA:   3'- uGCUAGGCUuuCUAG-UGgCGGUu-GCG- -5'
16175 3' -51.2 NC_004065.1 + 4616 0.75 0.833607
Target:  5'- cACGAcccUUCGAGAGGgagcggcaccaUCAgCGCCAGCGCc -3'
miRNA:   3'- -UGCU---AGGCUUUCU-----------AGUgGCGGUUGCG- -5'
16175 3' -51.2 NC_004065.1 + 5636 0.66 0.998883
Target:  5'- cACGGUgacgCCGAcGGAaCGCCGCCAcAUGg -3'
miRNA:   3'- -UGCUA----GGCUuUCUaGUGGCGGU-UGCg -5'
16175 3' -51.2 NC_004065.1 + 6154 0.69 0.981887
Target:  5'- uCGAUCCGGccGAGAUgGCCggGCCGG-GCg -3'
miRNA:   3'- uGCUAGGCU--UUCUAgUGG--CGGUUgCG- -5'
16175 3' -51.2 NC_004065.1 + 7192 0.68 0.991243
Target:  5'- gACGA-CCGAGcuGUgGCCGCCuAGCGg -3'
miRNA:   3'- -UGCUaGGCUUucUAgUGGCGG-UUGCg -5'
16175 3' -51.2 NC_004065.1 + 7498 0.73 0.912294
Target:  5'- cCGGcUCGAGGGuuUUACCGUCAACGCa -3'
miRNA:   3'- uGCUaGGCUUUCu-AGUGGCGGUUGCG- -5'
16175 3' -51.2 NC_004065.1 + 8798 0.68 0.98869
Target:  5'- aACGGUuuGGGAGGUCcGCCGaucaccacaaCCAACGg -3'
miRNA:   3'- -UGCUAggCUUUCUAG-UGGC----------GGUUGCg -5'
16175 3' -51.2 NC_004065.1 + 15616 0.67 0.99498
Target:  5'- --cAUCCGucAAGGUCACC-UCGACGCc -3'
miRNA:   3'- ugcUAGGCu-UUCUAGUGGcGGUUGCG- -5'
16175 3' -51.2 NC_004065.1 + 16831 0.69 0.985593
Target:  5'- -gGGUCCGAAAcuGA-CGCCGCaguucuGCGCa -3'
miRNA:   3'- ugCUAGGCUUU--CUaGUGGCGgu----UGCG- -5'
16175 3' -51.2 NC_004065.1 + 17840 0.67 0.99683
Target:  5'- -aGGUCUG--GGAUUGCCGCCGAgucgaGCa -3'
miRNA:   3'- ugCUAGGCuuUCUAGUGGCGGUUg----CG- -5'
16175 3' -51.2 NC_004065.1 + 18450 0.68 0.989773
Target:  5'- aACGAUUCGAgacugaccacgguGAccaucgcGAUCACCGUCGcCGCa -3'
miRNA:   3'- -UGCUAGGCU-------------UU-------CUAGUGGCGGUuGCG- -5'
16175 3' -51.2 NC_004065.1 + 19023 0.67 0.995675
Target:  5'- gACGAcUCCGAAGGGUUggacgacgGCgGCgGugGCc -3'
miRNA:   3'- -UGCU-AGGCUUUCUAG--------UGgCGgUugCG- -5'
16175 3' -51.2 NC_004065.1 + 19129 0.72 0.945355
Target:  5'- gACGGUCCGGAAGAagaugcCgaggacgacgacgauGCUGCCGAUGCc -3'
miRNA:   3'- -UGCUAGGCUUUCUa-----G---------------UGGCGGUUGCG- -5'
16175 3' -51.2 NC_004065.1 + 19287 0.66 0.998387
Target:  5'- cGCGA--CGggGGAUCuggACCGuCCGGCGa -3'
miRNA:   3'- -UGCUagGCuuUCUAG---UGGC-GGUUGCg -5'
16175 3' -51.2 NC_004065.1 + 19446 0.68 0.992337
Target:  5'- gACGuccuucugUCGGAAGAUCGUCGCCAugGa -3'
miRNA:   3'- -UGCua------GGCUUUCUAGUGGCGGUugCg -5'
16175 3' -51.2 NC_004065.1 + 21995 0.69 0.985593
Target:  5'- cACGGccacgCCGAcGGucAUCGCCGCCGGCa- -3'
miRNA:   3'- -UGCUa----GGCUuUC--UAGUGGCGGUUGcg -5'
16175 3' -51.2 NC_004065.1 + 22092 0.67 0.99683
Target:  5'- cGCGcUCCG-AAGAUCAUaugcgCGUCGACGg -3'
miRNA:   3'- -UGCuAGGCuUUCUAGUG-----GCGGUUGCg -5'
16175 3' -51.2 NC_004065.1 + 22220 0.67 0.99498
Target:  5'- gACGGUCgCGAugaccGUCAUCguGCCGGCGCc -3'
miRNA:   3'- -UGCUAG-GCUuuc--UAGUGG--CGGUUGCG- -5'
16175 3' -51.2 NC_004065.1 + 22405 0.7 0.969539
Target:  5'- aGCuGUCCcu--GGUCACCGUCGugGCg -3'
miRNA:   3'- -UGcUAGGcuuuCUAGUGGCGGUugCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.