miRNA display CGI


Results 21 - 40 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16175 3' -51.2 NC_004065.1 + 23136 0.69 0.979564
Target:  5'- cACGGUcCCGGGAGAaucccacUCACCGgCGACu- -3'
miRNA:   3'- -UGCUA-GGCUUUCU-------AGUGGCgGUUGcg -5'
16175 3' -51.2 NC_004065.1 + 23177 0.67 0.99683
Target:  5'- aGCGAUucUCGAGcAGGUCGgccCCGCCGAuccCGCc -3'
miRNA:   3'- -UGCUA--GGCUU-UCUAGU---GGCGGUU---GCG- -5'
16175 3' -51.2 NC_004065.1 + 24501 0.71 0.956038
Target:  5'- uCGAUCCGAGGGcgGUCAUCGUgGGCa- -3'
miRNA:   3'- uGCUAGGCUUUC--UAGUGGCGgUUGcg -5'
16175 3' -51.2 NC_004065.1 + 24580 0.76 0.771612
Target:  5'- cGCGGUCCGcgcgugucGUCGCCGCCAcCGCc -3'
miRNA:   3'- -UGCUAGGCuuuc----UAGUGGCGGUuGCG- -5'
16175 3' -51.2 NC_004065.1 + 27221 0.68 0.990031
Target:  5'- uACGAgaccCCGAuauccgcCACCGCCAugGUg -3'
miRNA:   3'- -UGCUa---GGCUuucua--GUGGCGGUugCG- -5'
16175 3' -51.2 NC_004065.1 + 27269 0.69 0.987214
Target:  5'- gACGAggaCGaAGAGAccggcggCGCCGCCGACGa -3'
miRNA:   3'- -UGCUag-GC-UUUCUa------GUGGCGGUUGCg -5'
16175 3' -51.2 NC_004065.1 + 27733 0.66 0.998883
Target:  5'- cGCGcuGUCC-AAAGAUCugaugaccCCGCC-GCGCa -3'
miRNA:   3'- -UGC--UAGGcUUUCUAGu-------GGCGGuUGCG- -5'
16175 3' -51.2 NC_004065.1 + 27881 0.66 0.998883
Target:  5'- gACGG-CCGGGAccuccguccGAUC-CUGCCGACGg -3'
miRNA:   3'- -UGCUaGGCUUU---------CUAGuGGCGGUUGCg -5'
16175 3' -51.2 NC_004065.1 + 28716 0.68 0.993319
Target:  5'- gGCGGagauccugUCCGAgGAGGagACCGCgGugGCg -3'
miRNA:   3'- -UGCU--------AGGCU-UUCUagUGGCGgUugCG- -5'
16175 3' -51.2 NC_004065.1 + 29066 0.66 0.998654
Target:  5'- cCGAUCCu--GGA--GCCGCC-GCGCu -3'
miRNA:   3'- uGCUAGGcuuUCUagUGGCGGuUGCG- -5'
16175 3' -51.2 NC_004065.1 + 29149 0.69 0.987214
Target:  5'- cACGA-CCGAc-GAUucgcCACCGCCcGCGCc -3'
miRNA:   3'- -UGCUaGGCUuuCUA----GUGGCGGuUGCG- -5'
16175 3' -51.2 NC_004065.1 + 29229 0.68 0.990031
Target:  5'- cCGcgCCGAGAcgccGUCGcCCGCCAccgccGCGCg -3'
miRNA:   3'- uGCuaGGCUUUc---UAGU-GGCGGU-----UGCG- -5'
16175 3' -51.2 NC_004065.1 + 29519 0.7 0.977506
Target:  5'- gGCGAUCCGAucGGAUCACUucagagaccagagGCCugucggcaucaggccGCGCu -3'
miRNA:   3'- -UGCUAGGCUu-UCUAGUGG-------------CGGu--------------UGCG- -5'
16175 3' -51.2 NC_004065.1 + 29768 0.67 0.99683
Target:  5'- uGCGAgagCCGAcuGAUCuCC-CCGACGg -3'
miRNA:   3'- -UGCUa--GGCUuuCUAGuGGcGGUUGCg -5'
16175 3' -51.2 NC_004065.1 + 30063 0.74 0.865204
Target:  5'- uCGAUCCcAGAGAcgggACCGCCGugGCg -3'
miRNA:   3'- uGCUAGGcUUUCUag--UGGCGGUugCG- -5'
16175 3' -51.2 NC_004065.1 + 31257 0.66 0.998387
Target:  5'- cUGAUcCCGuuGGGUCugUGCgGACGg -3'
miRNA:   3'- uGCUA-GGCuuUCUAGugGCGgUUGCg -5'
16175 3' -51.2 NC_004065.1 + 32258 0.66 0.998578
Target:  5'- gGCGAUCCGAugaagaccuacuGGGAcCGCCuggagucggcgaucGCCAAgGUg -3'
miRNA:   3'- -UGCUAGGCU------------UUCUaGUGG--------------CGGUUgCG- -5'
16175 3' -51.2 NC_004065.1 + 32838 0.67 0.996289
Target:  5'- --cGUCCGAGaAGGUgaGCCGguCCAGCGCg -3'
miRNA:   3'- ugcUAGGCUU-UCUAg-UGGC--GGUUGCG- -5'
16175 3' -51.2 NC_004065.1 + 33264 0.67 0.995675
Target:  5'- gACGAUCuCGAccggguguccGAUUACUGCCAggagaacagcggGCGCg -3'
miRNA:   3'- -UGCUAG-GCUuu--------CUAGUGGCGGU------------UGCG- -5'
16175 3' -51.2 NC_004065.1 + 34249 0.7 0.975043
Target:  5'- cGCGGUCCGccauGGUCAgCGCgacaCGGCGCc -3'
miRNA:   3'- -UGCUAGGCuuu-CUAGUgGCG----GUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.