miRNA display CGI


Results 1 - 20 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16175 3' -51.2 NC_004065.1 + 228855 0.66 0.998654
Target:  5'- aGCGGcgCCGAcgacacaaugGGGAcCACCGC-GGCGCa -3'
miRNA:   3'- -UGCUa-GGCU----------UUCUaGUGGCGgUUGCG- -5'
16175 3' -51.2 NC_004065.1 + 228216 0.68 0.990031
Target:  5'- cACGGgaaCCGc--GAUCGCCGCC-GCGUu -3'
miRNA:   3'- -UGCUa--GGCuuuCUAGUGGCGGuUGCG- -5'
16175 3' -51.2 NC_004065.1 + 226454 0.66 0.998387
Target:  5'- cCGAUCgaGAccGGGcUCGCCuucuGCCAGCGCc -3'
miRNA:   3'- uGCUAGg-CU--UUCuAGUGG----CGGUUGCG- -5'
16175 3' -51.2 NC_004065.1 + 226110 0.71 0.963219
Target:  5'- aACGAUUCGAAagcaggcggGGGUCGCCGCgugGAgGCu -3'
miRNA:   3'- -UGCUAGGCUU---------UCUAGUGGCGg--UUgCG- -5'
16175 3' -51.2 NC_004065.1 + 225595 0.68 0.991243
Target:  5'- uCGAggcCCGAGGGucagcGUCAggcCCGCCGugGCc -3'
miRNA:   3'- uGCUa--GGCUUUC-----UAGU---GGCGGUugCG- -5'
16175 3' -51.2 NC_004065.1 + 223066 0.69 0.979784
Target:  5'- --uAUCUGAGAGGaCuCCGUCGACGCa -3'
miRNA:   3'- ugcUAGGCUUUCUaGuGGCGGUUGCG- -5'
16175 3' -51.2 NC_004065.1 + 221753 0.66 0.997122
Target:  5'- cCGAUCaguccgaugagcaGAAAGGUCACgGCCGcgACGa -3'
miRNA:   3'- uGCUAGg------------CUUUCUAGUGgCGGU--UGCg -5'
16175 3' -51.2 NC_004065.1 + 221705 0.66 0.997718
Target:  5'- cGCGAUCCGuucggccgucuGAGGUacacgACCGCUAAcacCGCg -3'
miRNA:   3'- -UGCUAGGCu----------UUCUAg----UGGCGGUU---GCG- -5'
16175 3' -51.2 NC_004065.1 + 218091 0.68 0.98869
Target:  5'- aGCGGUCCGuAAGGAUagggCACCaCCAugaaagACGCc -3'
miRNA:   3'- -UGCUAGGC-UUUCUA----GUGGcGGU------UGCG- -5'
16175 3' -51.2 NC_004065.1 + 217619 0.66 0.998883
Target:  5'- gACGGUagcuaccguugaUCGAGAGAcUCGCCGCgAACu- -3'
miRNA:   3'- -UGCUA------------GGCUUUCU-AGUGGCGgUUGcg -5'
16175 3' -51.2 NC_004065.1 + 217064 0.68 0.991243
Target:  5'- gGCGuugCCGAGAaGUUuccaGCCGCCGucACGCu -3'
miRNA:   3'- -UGCua-GGCUUUcUAG----UGGCGGU--UGCG- -5'
16175 3' -51.2 NC_004065.1 + 214088 0.68 0.993319
Target:  5'- cACGAUCCGcGAGAgaaaucugacUCguGCgGCCGGuCGCa -3'
miRNA:   3'- -UGCUAGGCuUUCU----------AG--UGgCGGUU-GCG- -5'
16175 3' -51.2 NC_004065.1 + 212223 0.69 0.98382
Target:  5'- gUGAUCaCGcgGGAUCG-CGCCAaACGCg -3'
miRNA:   3'- uGCUAG-GCuuUCUAGUgGCGGU-UGCG- -5'
16175 3' -51.2 NC_004065.1 + 210955 0.66 0.997259
Target:  5'- uCGAUCCGAAAGAUaucagacgACUGCUcuagauugauacuGugGCg -3'
miRNA:   3'- uGCUAGGCUUUCUAg-------UGGCGG-------------UugCG- -5'
16175 3' -51.2 NC_004065.1 + 210840 0.66 0.998883
Target:  5'- aGCGG-CCGGAGGuGUC-CCGCCucgGCa -3'
miRNA:   3'- -UGCUaGGCUUUC-UAGuGGCGGuugCG- -5'
16175 3' -51.2 NC_004065.1 + 207912 0.7 0.975043
Target:  5'- aACGGUUCGAAAac-C-CCGUCGACGCg -3'
miRNA:   3'- -UGCUAGGCUUUcuaGuGGCGGUUGCG- -5'
16175 3' -51.2 NC_004065.1 + 207089 0.66 0.998387
Target:  5'- gGCGAcaaaUCUGAcgacGAGAcggaACCGCCGAcCGCc -3'
miRNA:   3'- -UGCU----AGGCU----UUCUag--UGGCGGUU-GCG- -5'
16175 3' -51.2 NC_004065.1 + 207059 0.69 0.981887
Target:  5'- gGCGAUCUcGGGGGUUuCCGCCucGAUGCc -3'
miRNA:   3'- -UGCUAGGcUUUCUAGuGGCGG--UUGCG- -5'
16175 3' -51.2 NC_004065.1 + 205170 0.66 0.998387
Target:  5'- uCGAggCCGcc--GUCGCCGCCAACa- -3'
miRNA:   3'- uGCUa-GGCuuucUAGUGGCGGUUGcg -5'
16175 3' -51.2 NC_004065.1 + 203603 0.67 0.995675
Target:  5'- gUGcUCuCGGAGGccgcCGCCGCCGugGCg -3'
miRNA:   3'- uGCuAG-GCUUUCua--GUGGCGGUugCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.