miRNA display CGI


Results 1 - 20 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16175 3' -51.2 NC_004065.1 + 170436 0.73 0.906252
Target:  5'- -gGAUCgaCGAAGGA-CGCCGCCGgagGCGCc -3'
miRNA:   3'- ugCUAG--GCUUUCUaGUGGCGGU---UGCG- -5'
16175 3' -51.2 NC_004065.1 + 137844 0.75 0.841797
Target:  5'- cACGG-CUGAAAcuugaccgcgucGAUCGCCGCCGACaGCg -3'
miRNA:   3'- -UGCUaGGCUUU------------CUAGUGGCGGUUG-CG- -5'
16175 3' -51.2 NC_004065.1 + 97501 0.74 0.857603
Target:  5'- aGCGAUCUGcggcGGAUCACC-CCGACGa -3'
miRNA:   3'- -UGCUAGGCuu--UCUAGUGGcGGUUGCg -5'
16175 3' -51.2 NC_004065.1 + 123993 0.74 0.857603
Target:  5'- cACGAUCgGcguguugauGAUCACCGCCGucgACGCc -3'
miRNA:   3'- -UGCUAGgCuuu------CUAGUGGCGGU---UGCG- -5'
16175 3' -51.2 NC_004065.1 + 127928 0.74 0.857603
Target:  5'- uCGGUCCGGcc-AUCGCCGCCcGCGUc -3'
miRNA:   3'- uGCUAGGCUuucUAGUGGCGGuUGCG- -5'
16175 3' -51.2 NC_004065.1 + 133512 0.74 0.857603
Target:  5'- uACGGUCCGAGucGGUCGCCGagAugGUg -3'
miRNA:   3'- -UGCUAGGCUUu-CUAGUGGCggUugCG- -5'
16175 3' -51.2 NC_004065.1 + 165672 0.74 0.879775
Target:  5'- cGCGAUCCGAGAgGAUCugCcaucCCAGgGCc -3'
miRNA:   3'- -UGCUAGGCUUU-CUAGugGc---GGUUgCG- -5'
16175 3' -51.2 NC_004065.1 + 139387 0.74 0.886734
Target:  5'- cGCGGUCUGAuGGGGUCGCgacgGCCcGCGCg -3'
miRNA:   3'- -UGCUAGGCU-UUCUAGUGg---CGGuUGCG- -5'
16175 3' -51.2 NC_004065.1 + 163863 0.73 0.899976
Target:  5'- cACGAUCCGAGaccggagagGGAUCuggaACCGCCuaggaGCa -3'
miRNA:   3'- -UGCUAGGCUU---------UCUAG----UGGCGGuug--CG- -5'
16175 3' -51.2 NC_004065.1 + 169287 0.75 0.816687
Target:  5'- cACGAUCUucaGGuugGGGAUCuuCGCCAGCGCg -3'
miRNA:   3'- -UGCUAGG---CU---UUCUAGugGCGGUUGCG- -5'
16175 3' -51.2 NC_004065.1 + 71859 0.75 0.816687
Target:  5'- -gGAUCCgGAAAGcgCgGCCGaCCAGCGCg -3'
miRNA:   3'- ugCUAGG-CUUUCuaG-UGGC-GGUUGCG- -5'
16175 3' -51.2 NC_004065.1 + 68377 0.76 0.799099
Target:  5'- gACGA-CCGAggcgAAGAUCGCCGCguuCGugGCg -3'
miRNA:   3'- -UGCUaGGCU----UUCUAGUGGCG---GUugCG- -5'
16175 3' -51.2 NC_004065.1 + 175517 0.81 0.531654
Target:  5'- cGCGuccgCCGAAAGAguaaCGCCGCCAACGa -3'
miRNA:   3'- -UGCua--GGCUUUCUa---GUGGCGGUUGCg -5'
16175 3' -51.2 NC_004065.1 + 101427 0.8 0.56151
Target:  5'- -aGGUCgGAgaaGAGGUCGCCGCCGGCGg -3'
miRNA:   3'- ugCUAGgCU---UUCUAGUGGCGGUUGCg -5'
16175 3' -51.2 NC_004065.1 + 78630 0.78 0.682441
Target:  5'- cCGAcCCGccuccgccacccaAGAGAUCgGCCGCCAGCGCa -3'
miRNA:   3'- uGCUaGGC-------------UUUCUAG-UGGCGGUUGCG- -5'
16175 3' -51.2 NC_004065.1 + 200513 0.78 0.703569
Target:  5'- gUGAUCCGAucGGAUCGCCGCgcacagggcgucCAugGCg -3'
miRNA:   3'- uGCUAGGCUu-UCUAGUGGCG------------GUugCG- -5'
16175 3' -51.2 NC_004065.1 + 63528 0.77 0.723446
Target:  5'- cGCGG-CCGu-AGAUCGCCGCgAGCGUg -3'
miRNA:   3'- -UGCUaGGCuuUCUAGUGGCGgUUGCG- -5'
16175 3' -51.2 NC_004065.1 + 91774 0.76 0.76219
Target:  5'- gGCGAggCUgGAGAGAUCGucguCCGCCAugGCg -3'
miRNA:   3'- -UGCUa-GG-CUUUCUAGU----GGCGGUugCG- -5'
16175 3' -51.2 NC_004065.1 + 24580 0.76 0.771612
Target:  5'- cGCGGUCCGcgcgugucGUCGCCGCCAcCGCc -3'
miRNA:   3'- -UGCUAGGCuuuc----UAGUGGCGGUuGCG- -5'
16175 3' -51.2 NC_004065.1 + 201982 0.76 0.790075
Target:  5'- cGCGAgaacUCGucGAGGUCguugGCCGCCAACGCg -3'
miRNA:   3'- -UGCUa---GGCu-UUCUAG----UGGCGGUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.