miRNA display CGI


Results 1 - 20 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16175 3' -51.2 NC_004065.1 + 161786 0.86 0.294396
Target:  5'- cCGGUCCGuccucGUCACCGCCGACGCg -3'
miRNA:   3'- uGCUAGGCuuuc-UAGUGGCGGUUGCG- -5'
16175 3' -51.2 NC_004065.1 + 192148 0.73 0.912294
Target:  5'- -aGGUgCGGAAcaucgugccGAUCACCGCCGuCGCg -3'
miRNA:   3'- ugCUAgGCUUU---------CUAGUGGCGGUuGCG- -5'
16175 3' -51.2 NC_004065.1 + 153261 0.72 0.92367
Target:  5'- gGCGAUgcgCCGGAcGAUgacgagGCCGCCGGCGCc -3'
miRNA:   3'- -UGCUA---GGCUUuCUAg-----UGGCGGUUGCG- -5'
16175 3' -51.2 NC_004065.1 + 173750 0.66 0.998883
Target:  5'- gACGAgacgcucuacaUCCacGAAuuGAUCGCCGCCAGgGa -3'
miRNA:   3'- -UGCU-----------AGG--CUUu-CUAGUGGCGGUUgCg -5'
16175 3' -51.2 NC_004065.1 + 120576 0.77 0.743011
Target:  5'- uCGAUCUGcguGAGGcgauacacgCGCCGCCAGCGCg -3'
miRNA:   3'- uGCUAGGCu--UUCUa--------GUGGCGGUUGCG- -5'
16175 3' -51.2 NC_004065.1 + 126271 0.77 0.752654
Target:  5'- gACGGUCCGGAGGcccCGCCGCgcgaacCGACGCc -3'
miRNA:   3'- -UGCUAGGCUUUCua-GUGGCG------GUUGCG- -5'
16175 3' -51.2 NC_004065.1 + 130793 0.76 0.78091
Target:  5'- gGCGuUCgCGAGgcGGAUCGCCugGCCGGCGCu -3'
miRNA:   3'- -UGCuAG-GCUU--UCUAGUGG--CGGUUGCG- -5'
16175 3' -51.2 NC_004065.1 + 4616 0.75 0.833607
Target:  5'- cACGAcccUUCGAGAGGgagcggcaccaUCAgCGCCAGCGCc -3'
miRNA:   3'- -UGCU---AGGCUUUCU-----------AGUgGCGGUUGCG- -5'
16175 3' -51.2 NC_004065.1 + 30063 0.74 0.865204
Target:  5'- uCGAUCCcAGAGAcgggACCGCCGugGCg -3'
miRNA:   3'- uGCUAGGcUUUCUag--UGGCGGUugCG- -5'
16175 3' -51.2 NC_004065.1 + 161431 0.73 0.906252
Target:  5'- uGCGAcgugUCGGcgcucuGGAUCGCCGCCGcCGCg -3'
miRNA:   3'- -UGCUa---GGCUu-----UCUAGUGGCGGUuGCG- -5'
16175 3' -51.2 NC_004065.1 + 87229 0.74 0.879775
Target:  5'- uUGAUCUcGAAGAUgGCCGCCcccGGCGCc -3'
miRNA:   3'- uGCUAGGcUUUCUAgUGGCGG---UUGCG- -5'
16175 3' -51.2 NC_004065.1 + 102862 0.74 0.857603
Target:  5'- aGCGAgagagagaCCGAGAGGgcgaUCGCCGCCGccgguaGCGCc -3'
miRNA:   3'- -UGCUa-------GGCUUUCU----AGUGGCGGU------UGCG- -5'
16175 3' -51.2 NC_004065.1 + 94612 0.79 0.642779
Target:  5'- aGCGGUCCGAucggcuccugacGGGGUCgggcGCgGCCGGCGCg -3'
miRNA:   3'- -UGCUAGGCU------------UUCUAG----UGgCGGUUGCG- -5'
16175 3' -51.2 NC_004065.1 + 163033 0.74 0.879775
Target:  5'- cACGGgcgCCGAcuGGUCACgGCUuGCGCg -3'
miRNA:   3'- -UGCUa--GGCUuuCUAGUGgCGGuUGCG- -5'
16175 3' -51.2 NC_004065.1 + 104673 0.78 0.663165
Target:  5'- cGCGcgCCGGAGGGUCACgaGgCGACGCu -3'
miRNA:   3'- -UGCuaGGCUUUCUAGUGg-CgGUUGCG- -5'
16175 3' -51.2 NC_004065.1 + 115132 0.74 0.856831
Target:  5'- cGCucUCCGGguagggaGAGGUCACCGCCAucgucgucggGCGCc -3'
miRNA:   3'- -UGcuAGGCU-------UUCUAGUGGCGGU----------UGCG- -5'
16175 3' -51.2 NC_004065.1 + 53004 0.73 0.899976
Target:  5'- uCGAUCCGGAGGAguUCGCUGaCA-CGCg -3'
miRNA:   3'- uGCUAGGCUUUCU--AGUGGCgGUuGCG- -5'
16175 3' -51.2 NC_004065.1 + 7498 0.73 0.912294
Target:  5'- cCGGcUCGAGGGuuUUACCGUCAACGCa -3'
miRNA:   3'- uGCUaGGCUUUCu-AGUGGCGGUUGCG- -5'
16175 3' -51.2 NC_004065.1 + 92144 0.78 0.693536
Target:  5'- aGCGcgCUG-AAGAUCACC-CCGACGCu -3'
miRNA:   3'- -UGCuaGGCuUUCUAGUGGcGGUUGCG- -5'
16175 3' -51.2 NC_004065.1 + 83265 0.76 0.76219
Target:  5'- -aGAUgCGgcAGA-CGCCGCCGACGCc -3'
miRNA:   3'- ugCUAgGCuuUCUaGUGGCGGUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.