miRNA display CGI


Results 1 - 20 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16175 5' -53.7 NC_004065.1 + 194375 0.66 0.993163
Target:  5'- gCGAuCGGCGGcCGGUcuucgucccugugggGACaGAGCGGcGGGCg -3'
miRNA:   3'- -GCU-GCCGCU-GCUA---------------CUG-CUUGUC-CUCG- -5'
16175 5' -53.7 NC_004065.1 + 105369 0.66 0.993163
Target:  5'- uGACGGCggacccggacucgcuGACGGccGGCGAGgAGGcGCu -3'
miRNA:   3'- gCUGCCG---------------CUGCUa-CUGCUUgUCCuCG- -5'
16175 5' -53.7 NC_004065.1 + 135386 0.66 0.992882
Target:  5'- gGACGGUGACGcgccggccgcgcccGACcccguCAGGAGCc -3'
miRNA:   3'- gCUGCCGCUGCua------------CUGcuu--GUCCUCG- -5'
16175 5' -53.7 NC_004065.1 + 126729 0.66 0.992787
Target:  5'- aGGCGGCGcugaucuCGAaggGAUGGugAuGGGGCu -3'
miRNA:   3'- gCUGCCGCu------GCUa--CUGCUugU-CCUCG- -5'
16175 5' -53.7 NC_004065.1 + 228850 0.66 0.992787
Target:  5'- cCGGCaGCGGCGccGACGAcACAauGGGGa -3'
miRNA:   3'- -GCUGcCGCUGCuaCUGCU-UGU--CCUCg -5'
16175 5' -53.7 NC_004065.1 + 229347 0.66 0.992787
Target:  5'- gGGCGGuCGcuCGAccaGCGAGCGGGuGCu -3'
miRNA:   3'- gCUGCC-GCu-GCUac-UGCUUGUCCuCG- -5'
16175 5' -53.7 NC_004065.1 + 98138 0.66 0.992787
Target:  5'- aGGCGGCGGCGGUG-CGcauCGcGuGCa -3'
miRNA:   3'- gCUGCCGCUGCUACuGCuu-GUcCuCG- -5'
16175 5' -53.7 NC_004065.1 + 40639 0.66 0.992787
Target:  5'- --uCGGCGACGGUGAcgcCGAACGGc--- -3'
miRNA:   3'- gcuGCCGCUGCUACU---GCUUGUCcucg -5'
16175 5' -53.7 NC_004065.1 + 201208 0.66 0.992787
Target:  5'- gGGCGGCG-CGgcGACGugcguGCAGaggacccgcGAGCu -3'
miRNA:   3'- gCUGCCGCuGCuaCUGCu----UGUC---------CUCG- -5'
16175 5' -53.7 NC_004065.1 + 168002 0.66 0.992787
Target:  5'- -aGCaGCaGCGAUGGCGAcCGGGGGa -3'
miRNA:   3'- gcUGcCGcUGCUACUGCUuGUCCUCg -5'
16175 5' -53.7 NC_004065.1 + 79256 0.66 0.992787
Target:  5'- uGACGGCG-CGAUGucuGCGGcUAGagucGAGCu -3'
miRNA:   3'- gCUGCCGCuGCUAC---UGCUuGUC----CUCG- -5'
16175 5' -53.7 NC_004065.1 + 191971 0.66 0.992787
Target:  5'- cCGGCGGC-ACGuugGACGggUcguGGGccAGCa -3'
miRNA:   3'- -GCUGCCGcUGCua-CUGCuuG---UCC--UCG- -5'
16175 5' -53.7 NC_004065.1 + 87112 0.66 0.992787
Target:  5'- uCGACGGcCGGCGugugGugGucCAGGAu- -3'
miRNA:   3'- -GCUGCC-GCUGCua--CugCuuGUCCUcg -5'
16175 5' -53.7 NC_004065.1 + 175572 0.66 0.992787
Target:  5'- -cGCGGCaGACcgcgcGCGAACAGcGAGCg -3'
miRNA:   3'- gcUGCCG-CUGcuac-UGCUUGUC-CUCG- -5'
16175 5' -53.7 NC_004065.1 + 173457 0.66 0.992787
Target:  5'- cCGGUGGCGGCGcucGACGccagcaccgaAGCGGGAuGCa -3'
miRNA:   3'- -GCUGCCGCUGCua-CUGC----------UUGUCCU-CG- -5'
16175 5' -53.7 NC_004065.1 + 225173 0.66 0.992592
Target:  5'- cCGAgGGCGGCGGUGguggugguuuucuucGguuugcuacagucuaCGAGCGcGGGGCg -3'
miRNA:   3'- -GCUgCCGCUGCUAC---------------U---------------GCUUGU-CCUCG- -5'
16175 5' -53.7 NC_004065.1 + 114881 0.66 0.992191
Target:  5'- aCGACGaUGGCGGUGACcucucccuacccggaGAGCGGGGa- -3'
miRNA:   3'- -GCUGCcGCUGCUACUG---------------CUUGUCCUcg -5'
16175 5' -53.7 NC_004065.1 + 111975 0.66 0.991772
Target:  5'- cCGGCcGCGAUGAaGGCGcucgaGGGGGCc -3'
miRNA:   3'- -GCUGcCGCUGCUaCUGCuug--UCCUCG- -5'
16175 5' -53.7 NC_004065.1 + 75567 0.66 0.991772
Target:  5'- gGucuCGGCGGCcGUGACGuucgugucgccGGCGGGGGg -3'
miRNA:   3'- gCu--GCCGCUGcUACUGC-----------UUGUCCUCg -5'
16175 5' -53.7 NC_004065.1 + 62657 0.66 0.991772
Target:  5'- --uUGGCGGCGGaGACG-GCAGcGGCg -3'
miRNA:   3'- gcuGCCGCUGCUaCUGCuUGUCcUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.