miRNA display CGI


Results 1 - 20 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16175 5' -53.7 NC_004065.1 + 182541 0.66 0.990529
Target:  5'- aGAUGGCGGCGuuaccaauAUGGCGGcuguuccaauaugGCGGauGGGCg -3'
miRNA:   3'- gCUGCCGCUGC--------UACUGCU-------------UGUC--CUCG- -5'
16175 5' -53.7 NC_004065.1 + 44663 0.66 0.988601
Target:  5'- aCGACGGCGucguCGgcGACGAAgcgauggucgucgacCAG-AGCg -3'
miRNA:   3'- -GCUGCCGCu---GCuaCUGCUU---------------GUCcUCG- -5'
16175 5' -53.7 NC_004065.1 + 127193 0.66 0.989405
Target:  5'- aGGCgGGCccuCGggGACGugguuCGGGAGCg -3'
miRNA:   3'- gCUG-CCGcu-GCuaCUGCuu---GUCCUCG- -5'
16175 5' -53.7 NC_004065.1 + 77984 0.66 0.989405
Target:  5'- uGGCcGCGGCGAgccgccccggGACGG--AGGAGCc -3'
miRNA:   3'- gCUGcCGCUGCUa---------CUGCUugUCCUCG- -5'
16175 5' -53.7 NC_004065.1 + 47045 0.66 0.989917
Target:  5'- aCGugGGCGauGCGcuguucaagaagaccAUGACc--CAGGAGCu -3'
miRNA:   3'- -GCugCCGC--UGC---------------UACUGcuuGUCCUCG- -5'
16175 5' -53.7 NC_004065.1 + 74599 0.66 0.989405
Target:  5'- cCGuCGGUGGCGGUGGCG-GCc-GAGUu -3'
miRNA:   3'- -GCuGCCGCUGCUACUGCuUGucCUCG- -5'
16175 5' -53.7 NC_004065.1 + 71568 0.66 0.988038
Target:  5'- aGAgGcGCG-UGAUGACGG-CAcGGGGCa -3'
miRNA:   3'- gCUgC-CGCuGCUACUGCUuGU-CCUCG- -5'
16175 5' -53.7 NC_004065.1 + 27123 0.66 0.988038
Target:  5'- aCGAUGaCGACGAUGAC-AACGacGAGCc -3'
miRNA:   3'- -GCUGCcGCUGCUACUGcUUGUc-CUCG- -5'
16175 5' -53.7 NC_004065.1 + 51020 0.66 0.988038
Target:  5'- aGACGccGCGGCGAgaucGAUGcACGGGGuGCu -3'
miRNA:   3'- gCUGC--CGCUGCUa---CUGCuUGUCCU-CG- -5'
16175 5' -53.7 NC_004065.1 + 48307 0.66 0.989405
Target:  5'- aGAUGGCGccgaagggauCGAUGAUGAGgAuGAGCc -3'
miRNA:   3'- gCUGCCGCu---------GCUACUGCUUgUcCUCG- -5'
16175 5' -53.7 NC_004065.1 + 137010 0.66 0.987749
Target:  5'- gCGAgGGCGACGAgaucccgcugagGAcCGAGCccuGGcAGCu -3'
miRNA:   3'- -GCUgCCGCUGCUa-----------CU-GCUUGu--CC-UCG- -5'
16175 5' -53.7 NC_004065.1 + 200116 0.66 0.989405
Target:  5'- aGACGGCGuCGGuccgcuccuggUGACaGAGCAGcuGGCc -3'
miRNA:   3'- gCUGCCGCuGCU-----------ACUG-CUUGUCc-UCG- -5'
16175 5' -53.7 NC_004065.1 + 152725 0.66 0.989405
Target:  5'- gGAgGGUGGCGGgugcuuUGACGGuguuuCGGGGGg -3'
miRNA:   3'- gCUgCCGCUGCU------ACUGCUu----GUCCUCg -5'
16175 5' -53.7 NC_004065.1 + 149016 0.66 0.989405
Target:  5'- -uGCGGCGAuCGGaaccucgggcUGACcu-CGGGAGCg -3'
miRNA:   3'- gcUGCCGCU-GCU----------ACUGcuuGUCCUCG- -5'
16175 5' -53.7 NC_004065.1 + 76985 0.66 0.988038
Target:  5'- gGGCGGgaGACGAUGcugGAGgAGGAGg -3'
miRNA:   3'- gCUGCCg-CUGCUACug-CUUgUCCUCg -5'
16175 5' -53.7 NC_004065.1 + 114477 0.66 0.989009
Target:  5'- gCGGCGGUGGCGGUacuuuCGAucccccucucccacACGGGGGa -3'
miRNA:   3'- -GCUGCCGCUGCUAcu---GCU--------------UGUCCUCg -5'
16175 5' -53.7 NC_004065.1 + 49999 0.66 0.989917
Target:  5'- cCGcACGGUG-CGA-GACGAGuccgggacacgagcuCAGGGGCc -3'
miRNA:   3'- -GC-UGCCGCuGCUaCUGCUU---------------GUCCUCG- -5'
16175 5' -53.7 NC_004065.1 + 62287 0.66 0.990647
Target:  5'- aCGAUGGUGGCGAggaGAaGAucccucgucACAGGGcGCa -3'
miRNA:   3'- -GCUGCCGCUGCUa--CUgCU---------UGUCCU-CG- -5'
16175 5' -53.7 NC_004065.1 + 105369 0.66 0.993163
Target:  5'- uGACGGCggacccggacucgcuGACGGccGGCGAGgAGGcGCu -3'
miRNA:   3'- gCUGCCG---------------CUGCUa-CUGCUUgUCCuCG- -5'
16175 5' -53.7 NC_004065.1 + 117209 0.66 0.989405
Target:  5'- aGGCaGGUGAUGGcgggGACGGACGucGcGAGCg -3'
miRNA:   3'- gCUG-CCGCUGCUa---CUGCUUGU--C-CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.