Results 21 - 40 of 377 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16175 | 5' | -53.7 | NC_004065.1 | + | 144370 | 0.78 | 0.56279 |
Target: 5'- uCGACGGCGcugGCGGUGACGAuCuGGuGCc -3' miRNA: 3'- -GCUGCCGC---UGCUACUGCUuGuCCuCG- -5' |
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16175 | 5' | -53.7 | NC_004065.1 | + | 152320 | 0.78 | 0.56279 |
Target: 5'- cCGGCGGgGACGAUGACGGcuucgaccucgaGgAGGAGa -3' miRNA: 3'- -GCUGCCgCUGCUACUGCU------------UgUCCUCg -5' |
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16175 | 5' | -53.7 | NC_004065.1 | + | 200833 | 0.78 | 0.56279 |
Target: 5'- gCGACGGgGACGAcccgGugGAguucggcgucgACGGGGGCg -3' miRNA: 3'- -GCUGCCgCUGCUa---CugCU-----------UGUCCUCG- -5' |
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16175 | 5' | -53.7 | NC_004065.1 | + | 62342 | 0.78 | 0.572596 |
Target: 5'- aGACGGCGACGAucacUGACGcgucGCGGGuuccgAGCa -3' miRNA: 3'- gCUGCCGCUGCU----ACUGCu---UGUCC-----UCG- -5' |
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16175 | 5' | -53.7 | NC_004065.1 | + | 127244 | 0.78 | 0.572596 |
Target: 5'- gCGGUGGCGGgGAUGAUGAGCGcGAGCg -3' miRNA: 3'- -GCUGCCGCUgCUACUGCUUGUcCUCG- -5' |
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16175 | 5' | -53.7 | NC_004065.1 | + | 141651 | 0.77 | 0.592322 |
Target: 5'- gGGCGGUGGCGGUGccgcggccGCGGACGaGAGCg -3' miRNA: 3'- gCUGCCGCUGCUAC--------UGCUUGUcCUCG- -5' |
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16175 | 5' | -53.7 | NC_004065.1 | + | 4377 | 0.77 | 0.602229 |
Target: 5'- gCGACGGCGGCGgcGG-GAGCcGGAGUg -3' miRNA: 3'- -GCUGCCGCUGCuaCUgCUUGuCCUCG- -5' |
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16175 | 5' | -53.7 | NC_004065.1 | + | 26367 | 0.77 | 0.612157 |
Target: 5'- gCGACGGCGGCGggGAU--ACGGG-GCg -3' miRNA: 3'- -GCUGCCGCUGCuaCUGcuUGUCCuCG- -5' |
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16175 | 5' | -53.7 | NC_004065.1 | + | 223873 | 0.77 | 0.612157 |
Target: 5'- gCGA-GGCGAUcacggaGAUGACGAGUAGGAGCu -3' miRNA: 3'- -GCUgCCGCUG------CUACUGCUUGUCCUCG- -5' |
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16175 | 5' | -53.7 | NC_004065.1 | + | 131038 | 0.77 | 0.622099 |
Target: 5'- uGugGGCGACccUGugGAGCAGGuGUu -3' miRNA: 3'- gCugCCGCUGcuACugCUUGUCCuCG- -5' |
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16175 | 5' | -53.7 | NC_004065.1 | + | 34602 | 0.77 | 0.622099 |
Target: 5'- aCGACGGCGAC----GCG-GCGGGAGCg -3' miRNA: 3'- -GCUGCCGCUGcuacUGCuUGUCCUCG- -5' |
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16175 | 5' | -53.7 | NC_004065.1 | + | 108749 | 0.77 | 0.632049 |
Target: 5'- --cUGGCGAUGcgGACGAGCAaGAGCa -3' miRNA: 3'- gcuGCCGCUGCuaCUGCUUGUcCUCG- -5' |
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16175 | 5' | -53.7 | NC_004065.1 | + | 96270 | 0.77 | 0.632049 |
Target: 5'- gGAUGGaCGGCGG-GGCGGcCAGGGGCg -3' miRNA: 3'- gCUGCC-GCUGCUaCUGCUuGUCCUCG- -5' |
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16175 | 5' | -53.7 | NC_004065.1 | + | 46887 | 0.76 | 0.641999 |
Target: 5'- uGACGGCGAgGAUGcACGGcuggaGGGGGCc -3' miRNA: 3'- gCUGCCGCUgCUAC-UGCUug---UCCUCG- -5' |
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16175 | 5' | -53.7 | NC_004065.1 | + | 116928 | 0.76 | 0.641999 |
Target: 5'- uGAgGGaGACGGUGGCGAACAacGGGGUg -3' miRNA: 3'- gCUgCCgCUGCUACUGCUUGU--CCUCG- -5' |
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16175 | 5' | -53.7 | NC_004065.1 | + | 168561 | 0.76 | 0.651941 |
Target: 5'- -aGCGGCGGCGgcGGCGA-CAGcGGGCg -3' miRNA: 3'- gcUGCCGCUGCuaCUGCUuGUC-CUCG- -5' |
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16175 | 5' | -53.7 | NC_004065.1 | + | 75484 | 0.76 | 0.651941 |
Target: 5'- gCGAUGGCGGCGgcGAgGAuCAGGGcGCa -3' miRNA: 3'- -GCUGCCGCUGCuaCUgCUuGUCCU-CG- -5' |
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16175 | 5' | -53.7 | NC_004065.1 | + | 143297 | 0.76 | 0.651941 |
Target: 5'- aGGCGGCGuCGggGGCcgGGGCAGGAGg -3' miRNA: 3'- gCUGCCGCuGCuaCUG--CUUGUCCUCg -5' |
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16175 | 5' | -53.7 | NC_004065.1 | + | 102094 | 0.76 | 0.651941 |
Target: 5'- cCGACgcgGGCGGCGAUGGCcGGACcgAGGuGCg -3' miRNA: 3'- -GCUG---CCGCUGCUACUG-CUUG--UCCuCG- -5' |
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16175 | 5' | -53.7 | NC_004065.1 | + | 171967 | 0.76 | 0.661868 |
Target: 5'- uGGCGGCGGCGgcGGCGG--AGGGGUc -3' miRNA: 3'- gCUGCCGCUGCuaCUGCUugUCCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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