miRNA display CGI


Results 21 - 40 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16175 5' -53.7 NC_004065.1 + 111770 0.66 0.991772
Target:  5'- aCGACGaGaUGAUGAUGACGAcgaagACGGcAGUa -3'
miRNA:   3'- -GCUGC-C-GCUGCUACUGCU-----UGUCcUCG- -5'
16175 5' -53.7 NC_004065.1 + 194353 0.66 0.991665
Target:  5'- uCGAUgaGGUGuuccuucGCGAcGAUGAACAGGGGg -3'
miRNA:   3'- -GCUG--CCGC-------UGCUaCUGCUUGUCCUCg -5'
16175 5' -53.7 NC_004065.1 + 153353 0.66 0.990647
Target:  5'- gGACGGCGGCGccGACGcGAUccguuucGAGCc -3'
miRNA:   3'- gCUGCCGCUGCuaCUGC-UUGuc-----CUCG- -5'
16175 5' -53.7 NC_004065.1 + 77376 0.66 0.990647
Target:  5'- cCGuuGGCucCGAUGACGAGCgucGGGAuGUc -3'
miRNA:   3'- -GCugCCGcuGCUACUGCUUG---UCCU-CG- -5'
16175 5' -53.7 NC_004065.1 + 98402 0.66 0.990647
Target:  5'- gGAgGGCGAUGAgagUGGCG-GCGGcaugagauGAGCa -3'
miRNA:   3'- gCUgCCGCUGCU---ACUGCuUGUC--------CUCG- -5'
16175 5' -53.7 NC_004065.1 + 62287 0.66 0.990647
Target:  5'- aCGAUGGUGGCGAggaGAaGAucccucgucACAGGGcGCa -3'
miRNA:   3'- -GCUGCCGCUGCUa--CUgCU---------UGUCCU-CG- -5'
16175 5' -53.7 NC_004065.1 + 80088 0.66 0.990647
Target:  5'- gGACGGaggaGAgGGUGAguuCGGGCAcGGGCa -3'
miRNA:   3'- gCUGCCg---CUgCUACU---GCUUGUcCUCG- -5'
16175 5' -53.7 NC_004065.1 + 211487 0.66 0.990647
Target:  5'- gCGAgccaGGCGccCGGUGACGAucccgugcacCAGGAGUc -3'
miRNA:   3'- -GCUg---CCGCu-GCUACUGCUu---------GUCCUCG- -5'
16175 5' -53.7 NC_004065.1 + 58840 0.66 0.990647
Target:  5'- uGuCGGUGAUGu--ACaGACAGGAGCu -3'
miRNA:   3'- gCuGCCGCUGCuacUGcUUGUCCUCG- -5'
16175 5' -53.7 NC_004065.1 + 182541 0.66 0.990529
Target:  5'- aGAUGGCGGCGuuaccaauAUGGCGGcuguuccaauaugGCGGauGGGCg -3'
miRNA:   3'- gCUGCCGCUGC--------UACUGCU-------------UGUC--CUCG- -5'
16175 5' -53.7 NC_004065.1 + 60413 0.66 0.990409
Target:  5'- cCGACGagguuaaGCGACG-UGACGGcccccgcgaaccgGCcGGAGCc -3'
miRNA:   3'- -GCUGC-------CGCUGCuACUGCU-------------UGuCCUCG- -5'
16175 5' -53.7 NC_004065.1 + 47045 0.66 0.989917
Target:  5'- aCGugGGCGauGCGcuguucaagaagaccAUGACc--CAGGAGCu -3'
miRNA:   3'- -GCugCCGC--UGC---------------UACUGcuuGUCCUCG- -5'
16175 5' -53.7 NC_004065.1 + 49999 0.66 0.989917
Target:  5'- cCGcACGGUG-CGA-GACGAGuccgggacacgagcuCAGGGGCc -3'
miRNA:   3'- -GC-UGCCGCuGCUaCUGCUU---------------GUCCUCG- -5'
16175 5' -53.7 NC_004065.1 + 127193 0.66 0.989405
Target:  5'- aGGCgGGCccuCGggGACGugguuCGGGAGCg -3'
miRNA:   3'- gCUG-CCGcu-GCuaCUGCuu---GUCCUCG- -5'
16175 5' -53.7 NC_004065.1 + 77984 0.66 0.989405
Target:  5'- uGGCcGCGGCGAgccgccccggGACGG--AGGAGCc -3'
miRNA:   3'- gCUGcCGCUGCUa---------CUGCUugUCCUCG- -5'
16175 5' -53.7 NC_004065.1 + 152725 0.66 0.989405
Target:  5'- gGAgGGUGGCGGgugcuuUGACGGuguuuCGGGGGg -3'
miRNA:   3'- gCUgCCGCUGCU------ACUGCUu----GUCCUCg -5'
16175 5' -53.7 NC_004065.1 + 149016 0.66 0.989405
Target:  5'- -uGCGGCGAuCGGaaccucgggcUGACcu-CGGGAGCg -3'
miRNA:   3'- gcUGCCGCU-GCU----------ACUGcuuGUCCUCG- -5'
16175 5' -53.7 NC_004065.1 + 145947 0.66 0.989405
Target:  5'- gGACGGCGGaGAUG-Cuca-AGGAGCu -3'
miRNA:   3'- gCUGCCGCUgCUACuGcuugUCCUCG- -5'
16175 5' -53.7 NC_004065.1 + 74599 0.66 0.989405
Target:  5'- cCGuCGGUGGCGGUGGCG-GCc-GAGUu -3'
miRNA:   3'- -GCuGCCGCUGCUACUGCuUGucCUCG- -5'
16175 5' -53.7 NC_004065.1 + 117209 0.66 0.989405
Target:  5'- aGGCaGGUGAUGGcgggGACGGACGucGcGAGCg -3'
miRNA:   3'- gCUG-CCGCUGCUa---CUGCUUGU--C-CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.