miRNA display CGI


Results 41 - 60 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16175 5' -53.7 NC_004065.1 + 74599 0.66 0.989405
Target:  5'- cCGuCGGUGGCGGUGGCG-GCc-GAGUu -3'
miRNA:   3'- -GCuGCCGCUGCUACUGCuUGucCUCG- -5'
16175 5' -53.7 NC_004065.1 + 149016 0.66 0.989405
Target:  5'- -uGCGGCGAuCGGaaccucgggcUGACcu-CGGGAGCg -3'
miRNA:   3'- gcUGCCGCU-GCU----------ACUGcuuGUCCUCG- -5'
16175 5' -53.7 NC_004065.1 + 43165 0.66 0.989275
Target:  5'- gGACGGCGGgaacggcagacacCGAcacaGACGAcgcaAgAGGAGCc -3'
miRNA:   3'- gCUGCCGCU-------------GCUa---CUGCU----UgUCCUCG- -5'
16175 5' -53.7 NC_004065.1 + 114477 0.66 0.989009
Target:  5'- gCGGCGGUGGCGGUacuuuCGAucccccucucccacACGGGGGa -3'
miRNA:   3'- -GCUGCCGCUGCUAcu---GCU--------------UGUCCUCg -5'
16175 5' -53.7 NC_004065.1 + 37420 0.66 0.988601
Target:  5'- cCGACGGCGcguucacgcuggagcGCGuggaaGACGGACAGccgguguaucaGAGCc -3'
miRNA:   3'- -GCUGCCGC---------------UGCua---CUGCUUGUC-----------CUCG- -5'
16175 5' -53.7 NC_004065.1 + 44663 0.66 0.988601
Target:  5'- aCGACGGCGucguCGgcGACGAAgcgauggucgucgacCAG-AGCg -3'
miRNA:   3'- -GCUGCCGCu---GCuaCUGCUU---------------GUCcUCG- -5'
16175 5' -53.7 NC_004065.1 + 111914 0.66 0.988038
Target:  5'- cCGcGCGGCGACGAgaGACGc-CAuGGGCg -3'
miRNA:   3'- -GC-UGCCGCUGCUa-CUGCuuGUcCUCG- -5'
16175 5' -53.7 NC_004065.1 + 51111 0.66 0.988038
Target:  5'- aGAUGaUGAgGAUGAUGAGCGGGuAGa -3'
miRNA:   3'- gCUGCcGCUgCUACUGCUUGUCC-UCg -5'
16175 5' -53.7 NC_004065.1 + 27123 0.66 0.988038
Target:  5'- aCGAUGaCGACGAUGAC-AACGacGAGCc -3'
miRNA:   3'- -GCUGCcGCUGCUACUGcUUGUc-CUCG- -5'
16175 5' -53.7 NC_004065.1 + 76985 0.66 0.988038
Target:  5'- gGGCGGgaGACGAUGcugGAGgAGGAGg -3'
miRNA:   3'- gCUGCCg-CUGCUACug-CUUgUCCUCg -5'
16175 5' -53.7 NC_004065.1 + 51020 0.66 0.988038
Target:  5'- aGACGccGCGGCGAgaucGAUGcACGGGGuGCu -3'
miRNA:   3'- gCUGC--CGCUGCUa---CUGCuUGUCCU-CG- -5'
16175 5' -53.7 NC_004065.1 + 71568 0.66 0.988038
Target:  5'- aGAgGcGCG-UGAUGACGG-CAcGGGGCa -3'
miRNA:   3'- gCUgC-CGCuGCUACUGCUuGU-CCUCG- -5'
16175 5' -53.7 NC_004065.1 + 22312 0.66 0.987895
Target:  5'- gGACGGUGACGuUGACGAccccgucGCAcgacGAGg -3'
miRNA:   3'- gCUGCCGCUGCuACUGCU-------UGUc---CUCg -5'
16175 5' -53.7 NC_004065.1 + 137010 0.66 0.987749
Target:  5'- gCGAgGGCGACGAgaucccgcugagGAcCGAGCccuGGcAGCu -3'
miRNA:   3'- -GCUgCCGCUGCUa-----------CU-GCUUGu--CC-UCG- -5'
16175 5' -53.7 NC_004065.1 + 159973 0.66 0.987603
Target:  5'- -cGCGGCGAuCGuggccgucuccaccGUGACGAGCgacgccagcaGGGAGUu -3'
miRNA:   3'- gcUGCCGCU-GC--------------UACUGCUUG----------UCCUCG- -5'
16175 5' -53.7 NC_004065.1 + 208023 0.67 0.986539
Target:  5'- uGcCGGCGGCGAUGACcgucGGCGuGGccguGGCg -3'
miRNA:   3'- gCuGCCGCUGCUACUGc---UUGU-CC----UCG- -5'
16175 5' -53.7 NC_004065.1 + 79197 0.67 0.986539
Target:  5'- -aACGGUGGCGAagGACGcguACGGGgugAGCc -3'
miRNA:   3'- gcUGCCGCUGCUa-CUGCu--UGUCC---UCG- -5'
16175 5' -53.7 NC_004065.1 + 141756 0.67 0.986539
Target:  5'- -aACGGCGACGA---CGuGCGGGGGg -3'
miRNA:   3'- gcUGCCGCUGCUacuGCuUGUCCUCg -5'
16175 5' -53.7 NC_004065.1 + 59739 0.67 0.986539
Target:  5'- cCGGCGGCGAUGGUGcCGAccGCGuGGn-- -3'
miRNA:   3'- -GCUGCCGCUGCUACuGCU--UGU-CCucg -5'
16175 5' -53.7 NC_004065.1 + 140486 0.67 0.986539
Target:  5'- gGACGaG-GAgGAUGAgGAugAGGAGg -3'
miRNA:   3'- gCUGC-CgCUgCUACUgCUugUCCUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.