miRNA display CGI


Results 1 - 20 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16175 5' -53.7 NC_004065.1 + 324 0.68 0.962633
Target:  5'- uGuACGGCGugGGUGAcuuagaucgcCGAGC-GGAcGCg -3'
miRNA:   3'- gC-UGCCGCugCUACU----------GCUUGuCCU-CG- -5'
16175 5' -53.7 NC_004065.1 + 4377 0.77 0.602229
Target:  5'- gCGACGGCGGCGgcGG-GAGCcGGAGUg -3'
miRNA:   3'- -GCUGCCGCUGCuaCUgCUUGuCCUCG- -5'
16175 5' -53.7 NC_004065.1 + 5983 0.69 0.947655
Target:  5'- uGcCGGCGACGAcccgcagaUGAaGAACAuGAGCg -3'
miRNA:   3'- gCuGCCGCUGCU--------ACUgCUUGUcCUCG- -5'
16175 5' -53.7 NC_004065.1 + 6257 0.75 0.730275
Target:  5'- uGuCGuGCGGCGggGACGAGaGGGAGCc -3'
miRNA:   3'- gCuGC-CGCUGCuaCUGCUUgUCCUCG- -5'
16175 5' -53.7 NC_004065.1 + 12608 0.7 0.934124
Target:  5'- aCGACGuGCGauGCGAUGuuucACGuACGGGAGa -3'
miRNA:   3'- -GCUGC-CGC--UGCUAC----UGCuUGUCCUCg -5'
16175 5' -53.7 NC_004065.1 + 18958 0.71 0.90707
Target:  5'- gGACGGCGcauauuCGAgGAUGAGCGGGuGg -3'
miRNA:   3'- gCUGCCGCu-----GCUaCUGCUUGUCCuCg -5'
16175 5' -53.7 NC_004065.1 + 19042 0.79 0.513603
Target:  5'- aCGACGGCGGCGGuggcccacaucugUGACGAcgAGGAGg -3'
miRNA:   3'- -GCUGCCGCUGCU-------------ACUGCUugUCCUCg -5'
16175 5' -53.7 NC_004065.1 + 19456 0.69 0.955572
Target:  5'- gCGAUGaGCGugG-UGG-GGACGGGAGUc -3'
miRNA:   3'- -GCUGC-CGCugCuACUgCUUGUCCUCG- -5'
16175 5' -53.7 NC_004065.1 + 19562 0.71 0.881431
Target:  5'- gCGugGGUGuCGGUGGCG-GCGGuAGCg -3'
miRNA:   3'- -GCugCCGCuGCUACUGCuUGUCcUCG- -5'
16175 5' -53.7 NC_004065.1 + 19760 0.69 0.951722
Target:  5'- gGGCGuGCGGgGGUGugGGcgAC-GGAGCc -3'
miRNA:   3'- gCUGC-CGCUgCUACugCU--UGuCCUCG- -5'
16175 5' -53.7 NC_004065.1 + 20728 0.82 0.366372
Target:  5'- cCGACGGCGACGAcGGCGAucACGGcGAGg -3'
miRNA:   3'- -GCUGCCGCUGCUaCUGCU--UGUC-CUCg -5'
16175 5' -53.7 NC_004065.1 + 22159 0.72 0.874488
Target:  5'- uCGAC-GUGACGGUGAgGGGCGGuGGGUu -3'
miRNA:   3'- -GCUGcCGCUGCUACUgCUUGUC-CUCG- -5'
16175 5' -53.7 NC_004065.1 + 22312 0.66 0.987895
Target:  5'- gGACGGUGACGuUGACGAccccgucGCAcgacGAGg -3'
miRNA:   3'- gCUGCCGCUGCuACUGCU-------UGUc---CUCg -5'
16175 5' -53.7 NC_004065.1 + 23468 0.68 0.971698
Target:  5'- gCGGCucGCGACGAUGACGAcGCc-GAGUc -3'
miRNA:   3'- -GCUGc-CGCUGCUACUGCU-UGucCUCG- -5'
16175 5' -53.7 NC_004065.1 + 23603 0.68 0.968874
Target:  5'- aGGCaGGCGGUGA-GGCGGGCAGGcgGGUg -3'
miRNA:   3'- gCUG-CCGCUGCUaCUGCUUGUCC--UCG- -5'
16175 5' -53.7 NC_004065.1 + 23635 0.67 0.976786
Target:  5'- gGGCGGCuGGCcucgGGcCGAcGCAGGAGCc -3'
miRNA:   3'- gCUGCCG-CUGcua-CU-GCU-UGUCCUCG- -5'
16175 5' -53.7 NC_004065.1 + 24046 0.7 0.912931
Target:  5'- uCGuCGGUGAgGAUGGUGAGCGGcGGCa -3'
miRNA:   3'- -GCuGCCGCUgCUACUGCUUGUCcUCG- -5'
16175 5' -53.7 NC_004065.1 + 24544 0.72 0.874488
Target:  5'- aCGACGGCaGCGGaGACGAGCcccucgucGGGAucGCg -3'
miRNA:   3'- -GCUGCCGcUGCUaCUGCUUG--------UCCU--CG- -5'
16175 5' -53.7 NC_004065.1 + 24860 0.72 0.844721
Target:  5'- uGGCGGCGACGgcGGCcucGACGGuGGCa -3'
miRNA:   3'- gCUGCCGCUGCuaCUGc--UUGUCcUCG- -5'
16175 5' -53.7 NC_004065.1 + 25686 0.75 0.739794
Target:  5'- aGGCGGCGAgguaguaGAUGGCGucgucCGGGGGCc -3'
miRNA:   3'- gCUGCCGCUg------CUACUGCuu---GUCCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.